Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0767
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-8|AAN63414.1|  186|Caenorhabditis elegans Boca/mesd chape...    52   3e-07
U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    25   4.0  

>U37429-8|AAN63414.1|  186|Caenorhabditis elegans Boca/mesd
           chaperone for ywtd beta-propeller-egf protein 1 protein.
          Length = 186

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 20/36 (55%), Positives = 30/36 (83%)
 Frame = -3

Query: 591 IWQTSLWSNHIQAERYLIDDDRAIFMFKDGSQAWTA 484
           IWQ+ L++NH+  + ++IDD+RAIFMFK+G QA+ A
Sbjct: 117 IWQSQLYNNHVDLQVFVIDDNRAIFMFKNGEQAFEA 152


>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 327 YKYTYKSYNLFYYSYFITHPLELCF*YQVSFLGMFDFPIELL*APPVLI 473
           Y+    +Y   Y++Y +  P+ LCF Y +  +       +L    PVLI
Sbjct: 272 YRMINYTYIWLYHAYLLVIPVNLCFDYSMGCISSITTMWDLRALSPVLI 320


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 25.4 bits (53), Expect(2) = 4.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 316 ENFSTNIHINHTIYFIIV 369
           ++  T++H NH IYF+ V
Sbjct: 308 KSLETHVHANHNIYFVNV 325



 Score = 21.4 bits (43), Expect(2) = 4.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 253 MNILIFFIYVGRLLSAS 303
           M IL+F IY+G+ +  +
Sbjct: 256 MTILLFIIYIGQKIDTT 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,621,060
Number of Sequences: 27780
Number of extensions: 189313
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)