Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0767
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.56 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.98 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.1  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 291 TLSFRNVYGKL*YKYTYKSYN--LFYYSYFI 377
           +LS    Y    YKY Y +YN  L+Y +Y I
Sbjct: 317 SLSNNYNYNNNNYKYNYNNYNKKLYYKNYII 347


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 426 YPGKKPDIKNKALRDEL*NNYNKI 355
           +PG   + + K L D+L +NYN++
Sbjct: 12  FPGASANSEAKRLYDDLLSNYNRL 35


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 269 KIRIFIYNTNTFRKILSYNKKPQLCT 192
           K+R  IY T  F  + + N +  LC+
Sbjct: 16  KLRNLIYKTEAFDSLHAGNAEKTLCS 41


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -1

Query: 530 TEPFSCSKMDLKHGLLKNFY*NRRSLKKFNWKVKHTQERNLILKTKL*GMS 378
           TEP + +   +    +K F  N+  L + N       + N+I+  K   MS
Sbjct: 388 TEPSTTTSTTISQKHIKVFVVNKDILHEHNVDDNEDHDENMIIPPKKSDMS 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,704
Number of Sequences: 438
Number of extensions: 2601
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)