Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0767
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25970.1 68418.m03089 hypothetical protein contains Pfam prof...    29   3.1  

>At5g25970.1 68418.m03089 hypothetical protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 436

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -2

Query: 250 TIQTLLERFYLIIKNHNYVLANLVQFEILLVS--LRYVEKAVFY*SSY*DGLTSAYPVKM 77
           TI    + F  I  N+ + L  L Q  IL  S  L+  E      +S   GLT A+P K+
Sbjct: 22  TIVRFFDGFPSIASNYGWRLQELNQLAILWCSRVLQLEEGKEIVVTSSRTGLTKAFPYKL 81

Query: 76  SKILLFF 56
             +L FF
Sbjct: 82  LLLLGFF 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,743,313
Number of Sequences: 28952
Number of extensions: 164694
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)