Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0766
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   0.85 
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    27   2.0  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   2.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   4.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   4.5  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   6.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.0  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.9  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +3

Query: 252 LPLMPVVEEFEADYEYVTNEDSVCIIRTNKNAPNYRLIMIDLQNPAKENWRTLVPEHPTD 431
           LPL  VV E       V  EDS  +       P Y  I+  L+ P++E   T   E+   
Sbjct: 648 LPLDMVVNELLEKSPKVFPEDSRLLFAEQSRHPKYTDIIQKLKKPSREKSFTSSSEYSLP 707

Query: 432 VLDWAAAVDQDKLV 473
            +  A+   Q+ L+
Sbjct: 708 FISPASDYQQNPLL 721


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 446 RPIQHVRRVFGY*RPPVFLGGIL-EVDHDQPVVGSILVRADDAYRI 312
           RP   +  ++ +   PVF GG++ E   +    G +++  DD  R+
Sbjct: 273 RPFTEIEAIYSHDMTPVFSGGLVYEYSAEPNHYGLVVIDKDDERRV 318


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 387 RDSGGRS*SACSWEHSCSCG*CIQNPHS 304
           ++ GGR     SW +  S G CI N HS
Sbjct: 450 KNMGGRILLTGSWYNGVSIGDCIMNGHS 477


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 208 VLRRPQQAPGKSTGSCRSCQSSRNSKPITSTSRMRILYASSARTRMLPTTG 360
           +L   Q     S+ S  S  S+ +   I STS   +   SS  T ++PT G
Sbjct: 16  ILAFAQARSHSSSSSSTSKSSASHHSSINSTSATSVYDFSSLTTPIVPTNG 66


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 276  EFEADYEYVTNEDSVCIIRTNKNAPNYR 359
            +FE DY Y   +D  C++ +    P+ R
Sbjct: 1280 DFECDYNYRRLKDGTCVLVSGLQPPDTR 1307


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 338 QECSQLQADHDRPPESRQGKLADVSTR 418
           +E  +LQ+     PE  +GK+AD S R
Sbjct: 230 EEIEKLQSSIVHSPEKLKGKIADTSLR 256


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 244 TGSCRSCQSSRNSKPITSTSRMRILYASSARTRMLPTTG*S*STSRIPPRKTGGR*YPN- 420
           TG+  S  +S  S P+TST+R    + SS     + T+  S +TS           Y N 
Sbjct: 626 TGTSTSKVTSSTSIPLTSTNRTSTTFTSST---SISTSSSSTATSSTSFASESSSFYSNV 682

Query: 421 TRRTCWIGRPP*T 459
           T  +  +  PP T
Sbjct: 683 TTSSSTVSTPPPT 695


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 187  RQPRQPAV-LRRPQQAPGKSTGSCRSCQSSRNSKPITSTSRMRILYASSA 333
            ++PR  +   R+P+   G S+ +    ++S  SKP T+  + + L   +A
Sbjct: 1229 KKPRGKSTGTRKPRAIAGSSSSTAVKKEASSESKPSTTNRKQQTLLEFAA 1278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,272
Number of Sequences: 5004
Number of extensions: 31317
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)