Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0766
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0790 + 28083116-28083337,28083446-28083652,28083739-280838... 71 4e-13
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44... 67 6e-12
11_04_0310 + 16218439-16219383 31 0.37
03_06_0106 - 31682200-31682775 30 0.85
05_01_0179 - 1240271-1241600,1241713-1241765 30 1.1
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710... 29 2.0
06_01_0961 - 7389515-7389945,7390840-7391107,7391582-7391707 29 2.6
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 28 3.4
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 4.5
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 27 7.9
06_01_0225 - 1727461-1728825 27 7.9
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 27 7.9
>04_04_0790 +
28083116-28083337,28083446-28083652,28083739-28083809,
28083898-28084063,28084189-28084788,28084928-28085323
Length = 553
Score = 71.3 bits (167), Expect = 4e-13
Identities = 34/80 (42%), Positives = 49/80 (61%)
Frame = +3
Query: 243 NGKLPLMPVVEEFEADYEYVTNEDSVCIIRTNKNAPNYRLIMIDLQNPAKENWRTLVPEH 422
N LP + +V+EFEA Y + N+D+ TNKNAP Y+L ID+ P +W ++PE
Sbjct: 259 NAMLPFVKLVDEFEAYYALIANDDTQFTFLTNKNAPKYKLSRIDVNEP--HSWMDILPED 316
Query: 423 PTDVLDWAAAVDQDKLVIHY 482
VL+ A AV DKL+++Y
Sbjct: 317 EKAVLESACAVHGDKLLVNY 336
>01_01_0058 +
440328-440437,440514-440733,441605-441805,441915-441985,
442058-442217,444166-444492,444529-444759,444869-445249,
445573-445648,445736-445799,446334-446469,447666-447710,
447851-447916
Length = 695
Score = 67.3 bits (157), Expect = 6e-12
Identities = 30/81 (37%), Positives = 50/81 (61%)
Frame = +3
Query: 234 REINGKLPLMPVVEEFEADYEYVTNEDSVCIIRTNKNAPNYRLIMIDLQNPAKENWRTLV 413
+E G LP + +++ F+A Y V N+ TN+NAP +L+ +D++ P E W ++
Sbjct: 286 KETKGMLPFVKLIDNFDAQYHVVANDGDEFTFLTNRNAPKNKLVRVDIKKP--ELWTDIL 343
Query: 414 PEHPTDVLDWAAAVDQDKLVI 476
PEH DVL+ A AV+ ++L+I
Sbjct: 344 PEHERDVLESADAVNGNQLLI 364
>11_04_0310 + 16218439-16219383
Length = 314
Score = 31.5 bits (68), Expect = 0.37
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 146 RRLRFSTAVPQETPQRQRLRTATCLSGDSRVSGRDFTSVSDP 21
RRLR+ + PQR R +G+++V+GR +V +P
Sbjct: 138 RRLRYGVVLNPIPPQRGETRNGDQTTGENQVAGRRLITVKEP 179
>03_06_0106 - 31682200-31682775
Length = 191
Score = 30.3 bits (65), Expect = 0.85
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = +1
Query: 187 RQPRQPAVLRRPQQAPGKSTGSCRSCQSSRNSKPITSTSRMRILYASSARTRMLPTTG*S 366
R R+ + + P + G C + ++ P TSTSR R SSA R T
Sbjct: 74 RSKRRHRLGKPPPDLQAGAVGGCADGRGNKGPAPPTSTSRGRATSHSSAPPRSCWTL--- 130
Query: 367 *STSRIPPRKTGG 405
+ S PPR G
Sbjct: 131 -TASHPPPRSAAG 142
>05_01_0179 - 1240271-1241600,1241713-1241765
Length = 460
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 279 FEADYEYVTNEDSVCIIRTNKNAPNYRLIMIDLQNPAKENWRTL 410
+ D ++T+ + CI R KN LI + +NP + NWR L
Sbjct: 299 YYGDLTHLTDHEQRCIKRRKKND----LIKLPSKNPCRYNWRIL 338
>10_03_0016 -
7099862-7099967,7100059-7100357,7101862-7102171,
7104402-7105054,7105266-7105554,7106549-7106634
Length = 580
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 184 ARQPRQP-AVLRRPQQAPGKSTGSCRSCQSSRNS-KPITSTSRMRILYASSARTRMLPTT 357
AR+ R P A R ++ P ++T R+ ++ TST M A R P T
Sbjct: 368 ARRRRLPKATSTRRKERPARATAFRRNRGAAGGEDNAATSTEEMATSIGVPAMYRSRPET 427
Query: 358 G*S*STSRIPPRKTGG 405
G + +R PPR+ G
Sbjct: 428 GRYWTQTRRPPRRASG 443
>06_01_0961 - 7389515-7389945,7390840-7391107,7391582-7391707
Length = 274
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 160 AAIRHVGYDSPQRFLRKLHNDNVFGLRRVYPVIAEFLVVTSLQFPIRPSCRS 5
++IR+ + F K + + R PV++ +V+TS +RPSCRS
Sbjct: 157 SSIRYGAMEELGPFHVKSDGETLSARMRWPPVLSHHVVLTSPHCSLRPSCRS 208
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 184 ARQPRQPAVLRRPQQAPGKSTGSCRSCQSSRNSKPITSTSRMRILYASSARTRMLPTT 357
A + R+ A RRP ++ RS Q+ + P STS + I+ A TR+ P T
Sbjct: 29 AARRRRGAAARRPFVFTPRAVSDSRSSQTCLD--PDASTSVLGIILGGGAGTRLYPLT 84
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 196 RQPAVLRRPQQAPGKSTGSCRSCQSSRNSKPITSTSRMRILYASSA 333
R +R Q A S + S++NS+P T TSR R + SS+
Sbjct: 152 RPSTPVRTRQTANSTSDSAAARTTSAQNSRPSTPTSRSRAMPNSSS 197
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 270 VEEFEADYEYVTNEDSVCIIRTNKNAPNYRL---IMIDLQNPAKENWRTLVPEHPTD 431
VEE++ + V N+DS I TN+N + +L I +D N ++ + TD
Sbjct: 108 VEEYQVSHSAVVNDDSSISIPTNQNNSSGQLQLEIHLDATNEKSVPSNAILDANVTD 164
>06_01_0225 - 1727461-1728825
Length = 454
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 161 GRNQTRRLRFSTAVPQETPQRQRLRTATCLSGDSRVS 51
G R FSTA P P + L A CL G +VS
Sbjct: 125 GVEVARSSSFSTAFPVSEPGQYTLVFANCLGGGLKVS 161
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 288 DYEYVTNEDSVCIIRTNKNAPNYRLIMIDLQNPA 389
D+ Y TN V + +KN N+ LI L+NP+
Sbjct: 802 DFTYETNNWGVGLPPRDKNEENWHLIKPRLENPS 835
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,114
Number of Sequences: 37544
Number of extensions: 230940
Number of successful extensions: 813
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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