Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0766
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                30   0.87 
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_25279| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_36050| Best HMM Match : HLH (HMM E-Value=0.004)                     27   8.1  

>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +1

Query: 184 ARQPRQPAVLRRPQQAPGKSTGSCRSCQSSRNSKPITSTSRMRILYASSARTRMLPTT 357
           A +PRQ A   RP+Q+  KS    R+ Q+SR SK  TS  + +   A+   +R   T+
Sbjct: 602 AARPRQAARQARPRQSSRKS--KARARQASRKSKSKTSKPQDKNKQAARQASRKTKTS 657


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +1

Query: 214 RRPQQAPGKSTGSCRSCQSSRNSKPITSTSRMRILYASSARTRMLPTTG*S*STSRIPPR 393
           RRP+++  KS    R  +S   S+P  S  R R   + + R+R       S S  R P R
Sbjct: 176 RRPRKSRSKSLDRSRRSRSRSYSRPSPSPYRSRRSRSRTRRSRSRSRRSRSRSRDRRPRR 235

Query: 394 KTGGR*YPNTRRT 432
           ++  R     RR+
Sbjct: 236 RSRDRERSRERRS 248


>SB_25279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 184 ARQPRQPAVLRRPQQAPGKSTGSCR-SCQSSRNSKPITSTSRMRILYASSARTR 342
           A +PRQ A   RP+Q+  KS    R + + S+ SKP     +   L  +S +T+
Sbjct: 66  AARPRQAARQARPRQSSRKSKARARQASRKSKTSKPQDQDKQAARLRQASLKTK 119


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 7    TGKTDGSETEVKSR-PETLLSPDKHVAV 87
            T +TDG   E+  R  +TLL+PDK +A+
Sbjct: 1173 TLRTDGYSFELADRCQDTLLNPDKRIAI 1200


>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 462 LGLRRPPNPARPSGVRVLTSASF 394
           +GL  PP PA P G+  L  ASF
Sbjct: 504 IGLPGPPGPAGPRGIPGLPGASF 526


>SB_36050| Best HMM Match : HLH (HMM E-Value=0.004)
          Length = 141

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 140 LRFSTAVPQETPQRQRLRTA 81
           L+F   VPQ+TPQ Q LR A
Sbjct: 56  LKFVIGVPQDTPQIQTLREA 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,204,402
Number of Sequences: 59808
Number of extensions: 264898
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)