Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0766
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / proly...    70   7e-13
At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly...    66   2e-11
At3g09000.1 68416.m01053 proline-rich family protein                   28   2.9  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    27   6.6  
At3g08670.1 68416.m01007 expressed protein                             27   6.6  
At4g30080.1 68417.m04278 transcriptional factor B3 family protei...    27   8.8  
At4g25930.1 68417.m03729 hypothetical protein contains Pfam prof...    27   8.8  
At4g24660.1 68417.m03530 zinc finger homeobox family protein / Z...    27   8.8  
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s...    27   8.8  
At1g30825.1 68414.m03769 actin-related protein 2/3 complex 34kDa...    27   8.8  

>At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|P48147 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Homo
           sapiens}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 70.1 bits (164), Expect = 7e-13
 Identities = 30/83 (36%), Positives = 54/83 (65%)
 Frame = +3

Query: 234 REINGKLPLMPVVEEFEADYEYVTNEDSVCIIRTNKNAPNYRLIMIDLQNPAKENWRTLV 413
           R  N  LP + +++ F+A Y  + N++++    TNK+AP Y+++ +DL+ P+  +W  ++
Sbjct: 287 RGSNTLLPFVKLIDTFDAQYIAIANDETLFTFLTNKDAPKYKVVRVDLKEPS--SWTDVI 344

Query: 414 PEHPTDVLDWAAAVDQDKLVIHY 482
            EH  DVL  A+AV+ D+LV+ Y
Sbjct: 345 AEHEKDVLSTASAVNGDQLVVSY 367


>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Mus
           musculus}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 30/77 (38%), Positives = 49/77 (63%)
 Frame = +3

Query: 252 LPLMPVVEEFEADYEYVTNEDSVCIIRTNKNAPNYRLIMIDLQNPAKENWRTLVPEHPTD 431
           LP + +V+ F+A Y  ++N++++    TNK+AP Y+L+ +DL+ P   +W  +V EH  D
Sbjct: 293 LPFIKLVDTFDAQYSVISNDETLFTFLTNKDAPKYKLVRVDLKEP--NSWTDVVEEHEKD 350

Query: 432 VLDWAAAVDQDKLVIHY 482
           VL  A AV+ + LV  Y
Sbjct: 351 VLASACAVNGNHLVACY 367


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +1

Query: 205 AVLRRPQQAPGKSTGSCRSCQSSRNSKPITSTSRMRILYASSAR----TRMLPTTG*S*S 372
           A LRRP  +    + S  +  + R++ P TSTSR     AS++R    T     T    +
Sbjct: 142 AGLRRPSSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARAT 201

Query: 373 TSRIPPRKT 399
           TS   PR T
Sbjct: 202 TSTAAPRTT 210


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 471 PVYLGLRRPPNPARPSGVRVLTSASFP 391
           P  LG R PP PA PSG    T    P
Sbjct: 83  PPRLGNRNPPPPASPSGQEPTTPTMTP 109


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 232 PGKSTGSCRSCQSSRNSKPITSTSRMRILYASSARTRMLPTTG*S*STSRIP 387
           PG S+ S    + S +S+P T TSR ++  +S       P +  S  T R P
Sbjct: 226 PGSSSSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSP 277


>At4g30080.1 68417.m04278 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain
          Length = 670

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 237 EINGKLPLMPVVEEFEADYEYVTNEDSVCIIRTNKNAPNY 356
           E+  KL L+P+ ++   D+EY   EDS      ++  P++
Sbjct: 81  EVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSF 120


>At4g25930.1 68417.m03729 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 434

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 377 EVDHDQPVVGSILVRADDAYRILIRDVLVIGFEFLDDW 264
           +V +D       LV  D      +R+V+ +GF   DDW
Sbjct: 120 QVYYDDKYYEKNLVIKDQGLAEEVREVMTVGFSHKDDW 157


>At4g24660.1 68417.m03530 zinc finger homeobox family protein /
           ZF-HD homeobox family protein hypothetical protein
           T8K22.16, Arabidopsis thalianachromosome II BAC T8K22,
           PATX:G3184285
          Length = 220

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 450 RPPNPARPSGVRVLTSASFPWR 385
           RPP P +P G   LTS + P+R
Sbjct: 115 RPPQPHQPPGYLHLTSPAAPYR 136


>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
           similar to SP|P54278 PMS1 protein homolog 2 (DNA
           mismatch repair protein PMS2) {Homo sapiens}; contains
           Pfam profiles PF02518: ATPase, histidine kinase-, DNA
           gyrase B-, and HSP90-like domain protein, PF01119: DNA
           mismatch repair protein, C-terminal domain
          Length = 923

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 225 LRSAKNSRLSRLSRTGYTSK 166
           LR+ +  RLSRL  TGY SK
Sbjct: 636 LRTRRLERLSRLQSTGYVSK 655


>At1g30825.1 68414.m03769 actin-related protein 2/3 complex 34kDa
           subunit family / arp2/3 complex 34kDa subunit family
           contains Pfam PF04045: Arp2/3 complex, 34kD subunit
           p34-Arc; similar to ARP2/3 complex 34 kDa subunit
           (P34-ARC) (Swiss-Prot:O96623) [Dictyostelium
           discoideum]; similar to ARP2/3 complex 34 kDa subunit
           (P34-ARC) (Actin-related protein 2/3 complex subunit 2)
           (Swiss-Prot:O15144) [Homo sapiens]
          Length = 318

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 282 EADYEYVTNEDSVCIIRTNKNAPNYRLIMIDLQNPAKE 395
           E DY+++  +D    ++     PN  L+ + L NP  E
Sbjct: 27  ELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPNPPPE 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,689,866
Number of Sequences: 28952
Number of extensions: 172359
Number of successful extensions: 548
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)