Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0765
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.22 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 310 TLTRII*SLALAVNFREIYYQ*ICCAFSTILFRSIIIRESPI 185
           T+  I+ +L +++ +R  + Q ICC    I  RS + RES I
Sbjct: 322 TINPILYNL-MSIKYRNAFKQTICCKTRIIGRRSWVTRESQI 362


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 72  FFLDDQNKKNIDFIELSPSC 13
           +FL+ ++K  IDFI+ +  C
Sbjct: 126 YFLNSESKDFIDFIQKNLQC 145


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 72  TNNYLNHSNSRKL 110
           +NNY N++N +KL
Sbjct: 314 SNNYYNNNNYKKL 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,435
Number of Sequences: 438
Number of extensions: 3645
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)