Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0764
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    47   3e-06
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    29   0.59 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   2.4  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   7.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.6  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
 Frame = +2

Query: 140 DGEELKKFKSSHAGTVSSIKVKEGDVVEP-SSAVADLEE-CRHPTVMMEMCAECGADLRS 313
           D E +++F+    G +    VK+ + +E  S  VA L E C H      +CA CG ++ S
Sbjct: 59  DREFVEQFECPVEGELVEWAVKKEESIENFSKIVAKLHEPCTHEVNYGGLCAICGKNITS 118

Query: 314 EE---TKKLDVAIVPMVHSVPELKVSEELAQKLGKEDAEXXXXXXXXXXXXXXXXXXXXX 484
           ++      +  A + M H+  +L VS E A +L  E+ +                     
Sbjct: 119 QDYMGYSDMARANISMTHNTGDLTVSLEEASRLESENVKRLRQEKRLSLIVDLDQTIIHA 178

Query: 485 XND-------NIPPN-----LKGVLHFFLR-GPGGPGRWCHTRLRPRTQEFLESAAKNYE 625
             D       + P N     L+ V  F L+ GP G     + + RP   +FL+  ++ YE
Sbjct: 179 TVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYE 238

Query: 626 LHICTFGAR 652
           LHI T G +
Sbjct: 239 LHIYTMGTK 247


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 128 DLAGDGEELKKFKSSHAGTVSSIKVKEG 211
           D AGD +EL   KSS AG  +  K++EG
Sbjct: 255 DKAGDAKELVNEKSSEAGQYAGQKMEEG 282


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 336 TSSFLVSSLRRSAPH-SAHISIITVGWRHSSKSATAELGSTTSPSFTLIDDTVPACDDLN 160
           T+SF+ SS   S P+ S  +   +       K+A+   GS++S S+T    T      ++
Sbjct: 703 TTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVS 762

Query: 159 FFNSSPS 139
              SS S
Sbjct: 763 SRQSSSS 769


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 305 LRSEETKKLDVAIVPMVHSVPELKVSEELAQKL 403
           LR  ++K +  AI   +HS+P+  V EEL + L
Sbjct: 387 LRDVKSKIIGPAIFKYLHSMPKPSVKEELQENL 419


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 351 IGTMATSSFLVSSLRRSAPHSAHISIITVGWRHSSKSATAELGSTTSPSFT 199
           + T   SSF  +++  ++  S  +S ++   R SSKSA   L  + S SFT
Sbjct: 176 LATPTRSSFSYNTVGAASLPSGGLSNLSSSLRSSSKSAGFSLFESASNSFT 226


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 119 LYKDLAGDGEELKKFKSSHAGTVSSIKVKE 208
           L  D+ GDGE    F  +H   +    VKE
Sbjct: 600 LLGDIRGDGERTPSFLENHRSLIGLSSVKE 629


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 189 DTVPACDDLNFFNSSPSPA 133
           DT+   DDL++FNSS S A
Sbjct: 367 DTIHYPDDLSYFNSSRSKA 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,414
Number of Sequences: 5004
Number of extensions: 57819
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)