Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0764
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 75 4e-14
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 35 0.067
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 29 2.5
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 5.8
SB_30159| Best HMM Match : zf-C3HC (HMM E-Value=3) 28 7.7
SB_1934| Best HMM Match : CHB_HEX_C (HMM E-Value=8.5) 28 7.7
SB_42031| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_20075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_14220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 75.4 bits (177), Expect = 4e-14
Identities = 49/144 (34%), Positives = 66/144 (45%)
Frame = +2
Query: 221 EPSSAVADLEECRHPTVMMEMCAECGADLRSEETKKLDVAIVPMVHSVPELKVSEELAQK 400
+P + + C H T+M ++C +CGADLR K L V H+V E+ A+
Sbjct: 1013 KPVAVIEQARICEHKTIMKDLCCDCGADLR----KCLAGDPVSPKHTVK----GEKEAEA 1064
Query: 401 LGKEDAEXXXXXXXXXXXXXXXXXXXXXXNDNIPPNLKGVLHFFLRGPGGPGRWCHTRLR 580
+G+ D E +P N+K V HF L PG P W HT+ R
Sbjct: 1065 VGRLDEERLLSTRKLALVVDLDQTLIHTTVQLVPANMKDVQHFVL--PGHP-MWYHTKFR 1121
Query: 581 PRTQEFLESAAKNYELHICTFGAR 652
P +FL+ AK YELHI T G R
Sbjct: 1122 PWAHKFLQKIAKFYELHIFTMGTR 1145
Score = 35.1 bits (77), Expect = 0.051
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +2
Query: 101 KGQVLFLYKDLAGDGEELKKF------KSSHAGTVSSIKVKEGDVVEPSSAVADLEECRH 262
+G VL Y+ L G +E K F KSS G V V EG++V+P + VA + C
Sbjct: 804 EGNVLAFYEKL-GQSDEKKAFITQPKLKSSRNGRVRKFLVSEGEIVQPGNIVARHKFCVQ 862
Query: 263 PTVMMEMCAE 292
T ++ E
Sbjct: 863 DTKIVSTARE 872
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 34.7 bits (76), Expect = 0.067
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = -3
Query: 336 TSSFLVSSLRRSAPHSAHISIITVGWRHSSKSATAELGSTTSPSFTLIDDTVPACDDLNF 157
+SS L SSL S+PH A +S+ T SS S T+ L + S + + + P +
Sbjct: 920 SSSALTSSLSPSSPHGAPLSLSTEELSTSSLSITSSLPQQSMQSPSPPEYSSPPSSSQST 979
Query: 156 FNSSPS 139
F SSPS
Sbjct: 980 FLSSPS 985
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +2
Query: 128 DLAGDGEELKKFKSSHAGTV-SSIKVKEGDVVEPSSAVAD 244
+L G+G +L +++S +GTV S+IK+ + D PS ++ D
Sbjct: 728 NLPGNGGDLSVYENSRSGTVISAIKLVDQDGDPPSCSLTD 767
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 179 GTVSSIKVKEGDVVEPSSAVADLE 250
GT+ S KEGD +EP A+ ++E
Sbjct: 4 GTIVSWLKKEGDTIEPGDALCEIE 27
>SB_30159| Best HMM Match : zf-C3HC (HMM E-Value=3)
Length = 440
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 85 LVLFSTLPSFTRLF*WNKNRYS 20
L++F T RLF WNKN YS
Sbjct: 134 LLVFRTAKEANRLFSWNKNFYS 155
>SB_1934| Best HMM Match : CHB_HEX_C (HMM E-Value=8.5)
Length = 280
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 311 SEETKKLDVAIVPMVHSVPELKVSEELAQKLG 406
S + +L++A+VP SVP +VS EL++K+G
Sbjct: 8 SRDISRLEMAVVP--GSVPFWEVSRELSRKVG 37
>SB_42031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 311 SEETKKLDVAIVPMVHSVPELKVSEELAQKLG 406
S + +L++A+VP SVP +VS EL++K+G
Sbjct: 8 SRDISRLEMAVVP--GSVPFWEVSRELSRKVG 37
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 182 TVSSIKVKEGDVVEPSSAVADLEECRHP--TVMMEMCAECGADLRSEETKKLDVAIVPMV 355
TV+S E D + E + P TV E + E T++ + +VP
Sbjct: 3148 TVASETTAEPDTTQAPETTVTPETTKAPETTVASETTVTPETTVAPETTEEPETTVVPET 3207
Query: 356 HSVPELKVSEE 388
+VPE +++E
Sbjct: 3208 TAVPETTITQE 3218
>SB_20075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 311 SEETKKLDVAIVPMVHSVPELKVSEELAQKLG 406
S + +L++A+VP SVP +VS EL++K+G
Sbjct: 8 SRDISRLEMAVVP--GSVPFWEVSRELSRKVG 37
>SB_14220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 311 SEETKKLDVAIVPMVHSVPELKVSEELAQKLG 406
S + +L++A+VP SVP +VS EL++K+G
Sbjct: 8 SRDISRLEMAVVP--GSVPFWEVSRELSRKVG 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,503,809
Number of Sequences: 59808
Number of extensions: 459489
Number of successful extensions: 1386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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