Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0764
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 353 VHSVPELKVSEELAQKLGKEDA 418
           +H++PE+KV+     K  KE+A
Sbjct: 398 IHTIPEVKVTPRFQAKRLKEEA 419


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 24  YLFLFHQKSLVKLGKVENKTRYCGNTRAKYYFYTKI*RAMVKS*RNLNHHT 176
           YL+L+H K+L+ + K+      C      Y   T+I   M++S   L+H T
Sbjct: 111 YLWLYHDKTLLYMSKL-TLVLSCAMKFESYPHDTQICSMMIES---LSHTT 157


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 60  VSPGFSDGTKIGIVCLVPNS 1
           V+   SDG+  G +CL+ N+
Sbjct: 510 VATSLSDGSYFGEICLLTNA 529


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 60  VSPGFSDGTKIGIVCLVPNS 1
           V+   SDG+  G +CL+ N+
Sbjct: 478 VATSLSDGSYFGEICLLTNA 497


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 494 NIPPNLKGVLHFFLRGPGGPGRWCHTRL 577
           N+PP    ++H   R    PG+  H  L
Sbjct: 33  NVPPEYSDLVHPHWRAFPAPGKHFHIGL 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,067
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)