Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0764
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i...    36   0.031
At5g09780.1 68418.m01132 transcriptional factor B3 family protei...    33   0.22 
At5g53230.1 68418.m06617 hypothetical protein contains Pfam prof...    31   0.51 
At3g19515.1 68416.m02473 expressed protein                             29   3.6  
At2g33050.1 68415.m04053 leucine-rich repeat family protein cont...    29   3.6  
At2g03420.1 68415.m00300 expressed protein                             29   3.6  
At1g26160.1 68414.m03193 metal-dependent phosphohydrolase HD dom...    29   3.6  
At4g30780.1 68417.m04361 expressed protein hypothetical protein ...    28   4.8  
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ...    28   6.3  
At3g17550.1 68416.m02241 NLI interacting factor (NIF) family pro...    28   6.3  
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    28   6.3  
At5g54210.1 68418.m06753 NLI interacting factor (NIF) family pro...    27   8.3  
At4g28770.1 68417.m04114 expressed protein                             27   8.3  
At3g54600.1 68416.m06041 DJ-1 family protein low similarity to S...    27   8.3  
At3g11760.1 68416.m01443 expressed protein                             27   8.3  
At1g30650.1 68414.m03748 WRKY family transcription factor contai...    27   8.3  

>At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3)
            identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis
            thaliana] GI:22212705; contains Pfam profile PF03031: NLI
            interacting factor
          Length = 1241

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 554  GRWCHTRLRPRTQEFLESAAKNYELHICTFG 646
            G W  T+LRP    FLE A+K YELH+ T G
Sbjct: 977  GMW--TKLRPGIWNFLEKASKLYELHLYTMG 1005


>At5g09780.1 68418.m01132 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 308

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 98  HKGQVLFLYKDLAGDGEELKKFKSSHAGTVSSIKVK-EGDVV-EPSSAVADLEECRHPTV 271
           HKGQ+ F  K    DG+E+ +   S A   SS +VK E DV  E    V+     R PT 
Sbjct: 100 HKGQMSFTVKIFNKDGKEMMQPPQSRASFASSSRVKTEQDVKREEEVLVSSDSRSRGPTT 159

Query: 272 MME 280
             E
Sbjct: 160 AAE 162


>At5g53230.1 68418.m06617 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 358

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 228 LGSTTSPSFTLIDDTVPACDDLNFFNSSPSPAK-SLYKNNTWPLCYHSTLFYFPLCRVSP 52
           +GS+     TL DD V   DDLN F S+  P + SL    T PLC    +    +   SP
Sbjct: 82  IGSSNGWVATLKDDVVRLQDDLNPFASASDPKRISLPPLVTLPLCQTQIVINVAMSSSSP 141

Query: 51  GFSD 40
              D
Sbjct: 142 EDDD 145


>At3g19515.1 68416.m02473 expressed protein
          Length = 507

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 137 GDGEELKKFKSSHAGTVSSIKVKEGDVV 220
           G G   + F+S HA  VSSI++ +G+VV
Sbjct: 290 GPGTNSRGFRSYHAVIVSSIEIYKGEVV 317


>At2g33050.1 68415.m04053 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 800

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = -1

Query: 515 PLDWVVYCH**CELMFDLNLPEVLISCLSEDAQHPLYLVFVPVLQTLLIQVQSV 354
           P+D  V+      L+FD+    +L + LS D++ PL L+ + ++Q  +I+  ++
Sbjct: 251 PIDLRVFAPLKSLLVFDIRQNRLLPASLSSDSEFPLSLISLILIQCDIIEFPNI 304


>At2g03420.1 68415.m00300 expressed protein
          Length = 170

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 231 ELGSTTSPSFTLIDDTVPACDDLNFF--NSSPSPAKSLYKNNTWPLCYHSTLFYFPLCRV 58
           ++ S + PSF+L +  V     ++    +S+PSP   L   +T+PL    TL   P C  
Sbjct: 5   KISSFSRPSFSLYEPRVIHHPRISMALSSSAPSPFHHLLCKSTFPLAASLTLLLSP-CTA 63

Query: 57  SPGFSDGT 34
             G   G+
Sbjct: 64  EAGLMSGS 71


>At1g26160.1 68414.m03193 metal-dependent phosphohydrolase HD
           domain-containing protein contains Pfam profile PF01966:
           HD domain
          Length = 258

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 209 GDVVEPSSAVADLEECRHPTVMM-EMCAECGADLRSEETKKL 331
           GD+  PS  V   E+ R  T  + EMC   G  LR+EE  +L
Sbjct: 144 GDIT-PSDGVPKEEKSRRETAALKEMCEVLGGGLRAEEITEL 184


>At4g30780.1 68417.m04361 expressed protein hypothetical protein
           F27D4.1 -  Arabidopsis thaliana,PID:g4115371
          Length = 589

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 48  SLVKLGKVENKTRYCGNTRAKYYF 119
           SL+K+G+ E K+RY G+  AK YF
Sbjct: 144 SLLKIGQWEYKSRYEGDLVAKCYF 167


>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
           similar to SP|Q01205 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 464

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 167 SSHAGTVSSIKVKEGDVVEPSSAVA 241
           S  +G +    VKEGD VEP + VA
Sbjct: 141 SPASGVIQEFLVKEGDTVEPGNKVA 165


>At3g17550.1 68416.m02241 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 296

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 569 TRLRPRTQEFLESAAKNYELHICTFGAR 652
           T+LRP   EFL+ A + + +++ T G R
Sbjct: 133 TKLRPFVHEFLKEANELFTMYVYTMGTR 160


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 308 RSEETKKLDVAIVPMVHSVPELKV 379
           + E+ K +D A++  + +VPELKV
Sbjct: 191 KKEDQKTVDAALIKSIEAVPELKV 214


>At5g54210.1 68418.m06753 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 306

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 572 RLRPRTQEFLESAAKNYELHICTFGAR 652
           +LRP   EFL+ A K + +++ T G R
Sbjct: 139 KLRPFVHEFLKEANKMFSMYVYTMGDR 165


>At4g28770.1 68417.m04114 expressed protein
          Length = 281

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -1

Query: 530 RSVILPLDWVVYCH**CELMFDLNLPEVLISCLSEDAQHPLYLVFVPVLQTLLIQVQS 357
           RS+ LP  W +YC     ++  +     +I  ++ +A +   L F  +L+TLLI +++
Sbjct: 102 RSLDLPAPWFIYCFMAIGILVCI---VTIIGFIAAEAINGCCLCFYSILKTLLIIIEA 156


>At3g54600.1 68416.m06041 DJ-1 family protein low similarity to
           SP|Q51732 protease I from Pyrococcus furiosus; contains
           Pfam profile: PF01965 DJ-1/PfpI family
          Length = 399

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 131 LAGDGEELKKFKSSHAGTVSSIKVKEGDVVEPSSAVAD 244
           LA  G   KK  +S  GT  ++KV  G++VE    V D
Sbjct: 333 LAATGALKKKRCASSYGTKVAVKVAGGEIVESERCVTD 370


>At3g11760.1 68416.m01443 expressed protein 
          Length = 702

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 470 FDLNLPEVLISCLSEDAQHPLYLVFVPVLQ 381
           FD+N+P  L +C++ +  HPL  V + +L+
Sbjct: 144 FDINIPLTLSACVASET-HPLLFVSLSLLE 172


>At1g30650.1 68414.m03748 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 430

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 125 KDLAGDGEELKKFKSSHAGTVSSIKVKEGDVV-EPSSAVADLEECRHPTVMMEMCAECGA 301
           KD  GD  EL+         ++  + +  D   +P    ADLEE    ++ M +   CG 
Sbjct: 336 KDERGDDMELENVDDDDDNQIAPYRPELHDHQHQPDDFFADLEELEGDSLSMLLSHGCGG 395

Query: 302 DLRSEET 322
           D + + T
Sbjct: 396 DGKDKTT 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,774
Number of Sequences: 28952
Number of extensions: 313908
Number of successful extensions: 913
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)