Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0763
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   79   2e-15
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  29   1.7  
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_22227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 41/86 (47%), Positives = 49/86 (56%)
 Frame = +3

Query: 255 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 434
           ++ E  +K S D DT ILFTK             AG   +  V F N G  D++V+ MEA
Sbjct: 134 EEKEDALKPSPDADTVILFTKNTEQ------QFSAGLVSKCLVSFSNNGRNDFMVDMMEA 187

Query: 435 SFRYPMDYTYYIQNFTALPYNREVKP 512
           S RYP DY+YYIQNFTA  YN  VKP
Sbjct: 188 SLRYPQDYSYYIQNFTAFQYNTVVKP 213


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 297 TTILFTKPVPSLGDLTFDIQ-AGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQ 473
           TT+ FTK V    DL+ D    GY V   V            ++ E +   P+ YT  I+
Sbjct: 744 TTVRFTKGVARFTDLSIDTPGTGYVVNMTVSTTPSSMYHGTAQTEEITIEEPLLYTSRIE 803

Query: 474 NFTALPY 494
               L Y
Sbjct: 804 AILNLQY 810


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 482 GEVLNVVCVVHWIPERCLH 426
           G  L V+C   W+ ERCLH
Sbjct: 142 GFTLQVICSQEWVRERCLH 160


>SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 225 NQVVGDDALVDDDESVVKSSQDID 296
           N  V DD + DDD+ VVK   D D
Sbjct: 219 NDAVDDDVVNDDDDDVVKDDGDDD 242


>SB_22227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 350 YSSWLPSGIFCGLHQQGFRRLCSRIHGGIFPVS-NG 454
           Y++W  +G+F   H    R++ S + G   PVS NG
Sbjct: 8   YAAWCEAGLFSQDHLMTLRKIDSELEGHPVPVSING 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,564
Number of Sequences: 59808
Number of extensions: 249894
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)