Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0763
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21160.1 68415.m02510 translocon-associated protein alpha (TR...    40   0.001
At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696 ...    28   3.3  
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    28   4.3  
At3g47150.1 68416.m05119 F-box family protein various predicted ...    27   7.6  

>At2g21160.1 68415.m02510 translocon-associated protein alpha (TRAP
           alpha) family protein contains Pfam profile: PF03896
           translocon-associated protein (TRAP), alpha subunit
          Length = 258

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = +3

Query: 240 DDALVDDDESV---VKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVD 410
           DDA+ +DD  +   + S   ++T  +F K    L      + AG   E  VG  N+G   
Sbjct: 44  DDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKL------VPAGEETELLVGLKNEGKTR 97

Query: 411 YVVESMEASFRYPMDYTYYIQNFTALPYNREVKP 512
             V  + AS   P D+   +QN T L  N    P
Sbjct: 98  VGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIP 131


>At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696
           enolase (EC 4.2.1.11) (2-phosphoglycerate
           dehydratase)(2-phospho-D- glycerate hydro-lyase)
           [Arabidopsis thaliana]
          Length = 444

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 228 QVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 359
           Q+VGDD LV + + V K+  +     L  K V  +G +T  I+A
Sbjct: 323 QIVGDDLLVTNPKRVAKAIAEKSCNALLLK-VNQIGSVTESIEA 365


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 462 MCSPLDTGKMPPWILLHSLRNP 397
           +C+ +D  K+ P +LLH+++NP
Sbjct: 269 ICNSIDCDKLSPPLLLHAVQNP 290


>At3g47150.1 68416.m05119 F-box family protein various predicted
           proteins, Arabidopsis thaliana
          Length = 360

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 439 SGIQWTTHTTFRTSPRCLITEKLS 510
           SG+ +    TF T   CL+TEK+S
Sbjct: 288 SGLDFKVMNTFYTGEICLVTEKIS 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,679
Number of Sequences: 28952
Number of extensions: 178916
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)