Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0762
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.7  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 48  KYCSHSFRLSTPVKTYIVNVNNTIVPV 128
           KY  +++      K YI+N+    VPV
Sbjct: 330 KYNYNNYNKKLYYKNYIINIEQIPVPV 356


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 347  SKVSSIVTTAAPPFKPKRITASQQKQ 424
            + V++ +TT  PP K +    SQQ Q
Sbjct: 957  TNVTTNLTTILPPVKVQSQQQSQQSQ 982


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 51  YCSHSFRLSTPVKTYIVNVNNTIVPV 128
           Y ++++      K YI+N+    VPV
Sbjct: 106 YNNNNYNKKLYYKNYIINIEQIPVPV 131


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 384 GGAAVVTILETLELISQGWWRIY 316
           GG  V  + E + +  + WW  Y
Sbjct: 58  GGVQVSPVQENIVIDKRPWWERY 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,341
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)