Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0761
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   5.5  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.2  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    25   7.2  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.2  

>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 119 LYFLFHIYLLLMLKINVCHLKKKKKN 42
           LYF+ HIY+L+ L +    ++ K  N
Sbjct: 443 LYFIVHIYILIALAVFNSPIRSKLDN 468


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 318 GVKSIYVFGLSVFLKCIVPIYC*SKILRFAIFR 416
           G + IY+ G SVF    +PI     +  F +FR
Sbjct: 106 GRRPIYLIGYSVFALLQIPIALSVNLAMFLVFR 138


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 318 GVKSIYVFGLSVFLKCIVPIYC*SKILRFAIFR 416
           G + IY+ G SVF    +PI     +  F +FR
Sbjct: 106 GRRPIYLIGYSVFALLQIPIALSVNLAMFLVFR 138


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 318 GVKSIYVFGLSVFLKCIVPIYC*SKILRFAIFR 416
           G + IY+ G SVF    +PI     +  F +FR
Sbjct: 106 GRRPIYLIGYSVFALLQIPIALSVNLAMFLVFR 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,536
Number of Sequences: 5004
Number of extensions: 34047
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)