Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0761
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)                 29   2.5  
SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)                 28   4.3  
SB_56623| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)                  27   7.5  

>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
          Length = 909

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 121 TDLKSVRHLNIKPLGNNNENKK 186
           +D  +VR L+  PL NNNENKK
Sbjct: 349 SDPSNVRLLDKSPLDNNNENKK 370


>SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)
          Length = 362

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 233 ELNFKIQINYNIKNKLCTKQLSGLLSLHRRQKHICVRFECILKMYSTYLLLVENFAVCNF 412
           E   +IQ    ++ +  ++Q S     HRR++ + +  E  +K    + +L+  FA+C F
Sbjct: 203 ETRHQIQKMAELRLESLSRQSSLGAGKHRRKRQLNISVE--VKAAKVFAVLITTFAICWF 260

Query: 413 P 415
           P
Sbjct: 261 P 261


>SB_56623| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)
          Length = 363

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 204 FLKPNTHKQMN*ILKFKSIITLKINSVLSNSVDYYLCTGVKSIYVF 341
           +L+ N H  +N +LK   ++ L +NS+L +   Y  C  V+  Y F
Sbjct: 90  WLQGNYHMSINLVLKTVVLLALSVNSLLGH---YMPCLEVRFNYYF 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,747
Number of Sequences: 59808
Number of extensions: 236036
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)