Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0761
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.29 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 264 TLKINSVLSNSVDYYLCTGVKSIYVFGLSVFL 359
           TL IN++   +  YYLC  V  I   GLS  +
Sbjct: 739 TLSINNIQKTNEGYYLCEAVNGIGA-GLSAVI 769



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 297 VDYYLCTGVKSIYVF-GLSVFLKCIVPIY 380
           V  Y  T V   Y   G S  LKC+VP +
Sbjct: 101 VAQYYDTDVNKEYAIRGNSAILKCVVPSF 129


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 434 ILLPHYTENCKPQNFRLTIN 375
           I +  Y  N KP NF +TIN
Sbjct: 488 IKIRQYRLNHKPFNFHITIN 507


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 434 ILLPHYTENCKPQNFRLTIN 375
           I +  Y  N KP NF +TIN
Sbjct: 488 IKIRQYRLNHKPFNFHITIN 507


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 364 HFKNTLKPNTYMLLTP 317
           HF N + PN Y+ + P
Sbjct: 129 HFHNIIMPNVYIRIFP 144


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 364 HFKNTLKPNTYMLLTP 317
           HF N + PN Y+ + P
Sbjct: 129 HFHNIIMPNVYIRIFP 144


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 345 LSVFLKCIVPIYC 383
           + VFL C VP +C
Sbjct: 278 MGVFLICWVPFFC 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,171
Number of Sequences: 438
Number of extensions: 2602
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)