Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0759
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 134 1e-32
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 131 8e-32
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 129 4e-31
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.59
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 7.3
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 9.7
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 134 bits (324), Expect = 1e-32
Identities = 60/96 (62%), Positives = 76/96 (79%)
Frame = +3
Query: 369 PGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 548
P E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G
Sbjct: 86 PDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYG 145
Query: 549 YPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRL 656
PNLK+VREL+YKRGF K++ QRI ++ N+I+E L
Sbjct: 146 IPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAAL 181
Score = 59.7 bits (138), Expect = 4e-10
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +2
Query: 140 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 319
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 320 EIRLARQARNRGNYYVPGGSQI 385
+I L R+AR GNYYVP +++
Sbjct: 70 QIELGRKARAEGNYYVPDETKL 91
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 131 bits (317), Expect = 8e-32
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = +3
Query: 369 PGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 548
P E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G
Sbjct: 85 PHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYG 144
Query: 549 YPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRL 656
PN K+VREL+YKRGF K++ QRIP++ N+I+E L
Sbjct: 145 IPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAAL 180
Score = 60.1 bits (139), Expect = 3e-10
Identities = 30/70 (42%), Positives = 41/70 (58%)
Frame = +2
Query: 161 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 340
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 341 ARNRGNYYVP 370
AR GNY+VP
Sbjct: 76 ARAEGNYFVP 85
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 129 bits (311), Expect = 4e-31
Identities = 58/96 (60%), Positives = 74/96 (77%)
Frame = +3
Query: 369 PGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 548
P E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLRI EPY+ +G
Sbjct: 84 PDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYG 143
Query: 549 YPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRL 656
PNL SVREL+YKRGF K++GQRI ++ N+++E+ L
Sbjct: 144 IPNLHSVRELIYKRGFGKINGQRIALSDNALIEEAL 179
Score = 55.6 bits (128), Expect = 6e-09
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = +2
Query: 161 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 340
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 341 ARNRGNYYVPGGSQI 385
A+N+G+ +VP +++
Sbjct: 75 AKNKGDIFVPDETKL 89
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +2
Query: 242 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 358
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 123 SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 296
S+G+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 510 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSI 641
N +I+ PY GYP +K + L YK KLS +PI + I
Sbjct: 35 NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,348
Number of Sequences: 5004
Number of extensions: 49263
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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