Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0759
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      159   1e-39
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   7.7  
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)                    28   7.7  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  159 bits (387), Expect = 1e-39
 Identities = 76/96 (79%), Positives = 85/96 (88%)
 Frame = +3

Query: 369 PGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 548
           P EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+G
Sbjct: 81  PPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFG 140

Query: 549 YPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRL 656
           YPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK L
Sbjct: 141 YPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVL 176



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 34/79 (43%), Positives = 49/79 (62%)
 Frame = +2

Query: 134 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 313
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 314 RDEIRLARQARNRGNYYVP 370
            DE+R+ + A+  GN+YVP
Sbjct: 63  VDELRMKKMAKKHGNFYVP 81


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 236 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 361
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 236 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 361
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 308 KERDEIRLARQARNRGNYYVP 370
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 547 PQAM*GSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFG 425
           P+ +  + +  +++V+L  R N  LF  RSL SC   RT+G
Sbjct: 428 PRVLCATLLPVVYSVSLDSRYNE-LFTGRSLQSCGNQRTWG 467


>SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)
          Length = 399

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 7  FCTRDTRAAWSFASQHDGCDYRKEGC 84
          F  ++    W   +QH  C +RK+GC
Sbjct: 9  FTDKELYGTWKVYAQHLNCYFRKQGC 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,464,939
Number of Sequences: 59808
Number of extensions: 387757
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)