Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0759
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   148   3e-36
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    31   0.72 
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   3.9  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  148 bits (359), Expect = 3e-36
 Identities = 65/96 (67%), Positives = 82/96 (85%)
 Frame = +3

Query: 369 PGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 548
           P E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWG
Sbjct: 80  PAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWG 139

Query: 549 YPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRL 656
           YPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L
Sbjct: 140 YPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSL 175



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 30/82 (36%), Positives = 49/82 (59%)
 Frame = +2

Query: 140 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 319
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 320 EIRLARQARNRGNYYVPGGSQI 385
            +RL R+A  +G++YVP   ++
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKV 85


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 221 VTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGGSQI 385
           ++LK     +KK  E      Q+VKE    E + ++   ++ N+ ++Y+  GS I
Sbjct: 1   MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSI 55


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 248 IKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGGSQI 385
           +KK  E      Q+VKE    E + ++   ++ N+ ++Y+  GS I
Sbjct: 27  LKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSI 72


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 551 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNF 438
           ++PS  RL    H H+ L Q +++ I    Q K++Q F
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFF 533


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -3

Query: 300 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 121
           YS+     L+K+S +FL  + + +S   + ++ R  ++++ ++        FL+   PLT
Sbjct: 24  YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82

Query: 120 G 118
           G
Sbjct: 83  G 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,755
Number of Sequences: 27780
Number of extensions: 279180
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)