Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0758
         (591 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 230 GGALSVTALTRGTPSLSVI 174
           GG +SVT L R  P L V+
Sbjct: 233 GGYISVTGLKRVNPKLKVL 251



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 172 LITDRDGVPLVRAVTERAPP 231
           LI D   +PL  AV +R PP
Sbjct: 73  LIADSRRLPLRDAVEKRPPP 92


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 271 ATDQASKLGLGRNKTIISMYSSYQVVQMSKLPLVITF-IGSDNCNTGHILSLESQI 435
           A+DQA+   + +N    S   S +V Q+   P ++ F  G D+ N G  +S++  +
Sbjct: 573 ASDQATYDCVAKNSQGYSARGSLEV-QVMVPPQILPFDFGEDSINEGDGVSVQCTV 627


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,248
Number of Sequences: 336
Number of extensions: 3375
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)