Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0758
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0625 - 19044775-19045078,19045178-19045382,19045534-190461...    31   0.52 
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    31   0.52 
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529...    29   3.7  

>09_04_0625 -
           19044775-19045078,19045178-19045382,19045534-19046168,
           19046334-19047391
          Length = 733

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 97  VKNMVDDLRKYLNHLLEKVNGLHCILITDR 186
           +K++ DD+R+YL+ + ++ N   C LI DR
Sbjct: 252 LKHLTDDIREYLHDMKKEWNACGCSLIADR 281


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +1

Query: 235 ALRPNFISTFGMATDQASKLGLGRNKTIISMYSSYQVVQMSKLPLVI 375
           ALR  F S+ G    QA  LG G+  +++ + ++++ V   K+PLVI
Sbjct: 265 ALRKLFESSIGC---QAYNLGTGKGTSVLEIVNAFEKVSGKKIPLVI 308


>02_04_0496 + 23446039-23446964,23452755-23452845,23452946-23452996,
            23453080-23453206,23453390-23453425,23453443-23453473,
            23453488-23453576,23454341-23454462,23455601-23455778,
            23458343-23458470,23458592-23458658,23459167-23459272,
            23459365-23459473,23459965-23460084,23460187-23460220,
            23460471-23460547,23460640-23460692,23460847-23460898,
            23461270-23461767
          Length = 964

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +1

Query: 256  STFGMATDQASKLGLGRNKTIISMYSSYQVVQMSKLPLVITFIGSDNCNTGHILSLESQI 435
            ST  +A D+A+ + L  +   I++  +Y  +  S+        GSD+ NTG  + +++  
Sbjct: 893  STTAVAADEATVVSL--STATITIVDNYFFINTSEEVDPTANAGSDDSNTGDEVKVDATA 950

Query: 436  EPFLKDLEVVVAD 474
               L D E++ ++
Sbjct: 951  SSGLSDWELIYSE 963


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,188
Number of Sequences: 37544
Number of extensions: 330112
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)