Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0758
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9953| Best HMM Match : VWA (HMM E-Value=0)                          32   0.40 
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   3.8  
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)                      28   6.6  

>SB_9953| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1034

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +1

Query: 154 NGLHCILITDRDGVPLVRAVTERAPPLALRPNFISTF----GMATDQASKLGLGRNKTII 321
           NG+  IL+   DGV     V+ + P   LR N I+ F    G+ T++A    +  +    
Sbjct: 247 NGITKILLVVTDGVSTGSLVSLKEPIRKLRENGINIFSVGVGLRTNKAELEFMASDPKNE 306

Query: 322 SMYSSYQVVQMSKLPLVITFIGSDNC 399
            M+S   V+ MS+LP +++ + +  C
Sbjct: 307 HMFS---VMSMSQLPTLLSALTTSTC 329


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +1

Query: 88  FFTVKNMVDDLRKYLNHLLEKVNGLHCILITDRDGVPLVRAVTERAPPL----ALRPNFI 255
           FF +   +DD+RK LN   E++     + + D     +  AV E+A  L     +  N +
Sbjct: 523 FFNIT--IDDIRKSLNVTFEELMHTPTVELQDVTPYVITHAVREQATLLNVSEVVANNLM 580

Query: 256 STF-GMATDQASKLGLGRNKTIISMYSSYQVVQMSKLPLVITFIGSDNCNTGHILSLESQ 432
             F    T    K G+   K+II+M S+Y+  +  K  L  + +     +   IL     
Sbjct: 581 HVFPDNGTIAQLKAGVDIVKSIIAMRSAYE-QRFIKTYLDQSSVSDSGFDNMTILGAALS 639

Query: 433 IEPFLKD 453
              FLKD
Sbjct: 640 TSGFLKD 646


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -2

Query: 191 PSLSVIKIQCRPFTFSSK*FKYFLRSSTIFFTVKNLFLLLEIWKASKY*IVKKIR 27
           P L V   Q RP    S  F  F R  T+F  +  + L L I   S + I+KK+R
Sbjct: 799 PLLRVTISQGRPRCGLSPEFVSFGRVFTVFLVIAYILLPLAIQTCSYFLIIKKLR 853


>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 528

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 450 GLGGGSCRCTLNQTSETKIFLINYSYKHVFKIYQ 551
           GLG    R  +++  ETK+F I  S++H F+  Q
Sbjct: 456 GLGIEGSRYGIHEYLETKLFQIRMSFRHQFRQIQ 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,149
Number of Sequences: 59808
Number of extensions: 366555
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)