Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0758
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    29   1.8  
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1...    29   3.1  
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi...    29   3.1  
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi...    29   3.1  
At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putati...    27   9.4  
At1g64050.1 68414.m07255 expressed protein                             27   9.4  

>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 475 HLQLPPPSPSRTVQSDSLMIRCDQ 404
           H   PPP PSR V+SD LM +  Q
Sbjct: 280 HYYPPPPPPSRMVKSDILMYKQQQ 303


>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
           family protein similar to 13S condensin XCAP-D2 subunit
           [Xenopus laevis] GI:3764087; contains Pfam profile
           PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
          Length = 1439

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 103 NMVDDLRKYLNHLLEKVNGLHCILITDRDGVPLVRAVTERAPPLALRPNFISTFGM 270
           N+V+ LR  L+ LL  V+ +   +    D VP++  +T     L +   F+ T  M
Sbjct: 85  NLVESLRSNLSVLLPNVDSISRSVQDQEDDVPIIDRITSHRNALKIYTFFLLTVVM 140


>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 244 PNFISTFGMATDQASKLGLGRNKTIISMYSSYQVVQMSKLPLVITFIGSDNCNTGHILSL 423
           P   +T+G  T    +  +  N+ + S +S+  V +M K P          CN+GHI+  
Sbjct: 246 PTTNNTYGKRTSVLQRPHIDSNRFVPSGFSNSSV-EMMKGPSGTALTSRQYCNSGHIVEN 304

Query: 424 ESQI 435
            S +
Sbjct: 305 VSSV 308


>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 244 PNFISTFGMATDQASKLGLGRNKTIISMYSSYQVVQMSKLPLVITFIGSDNCNTGHILSL 423
           P   +T+G  T    +  +  N+ + S +S+  V +M K P          CN+GHI+  
Sbjct: 246 PTTNNTYGKRTSVLQRPHIDSNRFVPSGFSNSSV-EMMKGPSGTALTSRQYCNSGHIVEN 304

Query: 424 ESQI 435
            S +
Sbjct: 305 VSSV 308


>At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]
          Length = 759

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 13  ARGTNLIFFTI*YLLAFHISKSKKRFFTVKNMVDDLRKYLNHLLEKVN-GLH 165
           A     IFF   +++  +I+   ++ FT ++ V+ LR   NH  E    GLH
Sbjct: 118 AENAGSIFFNAPFVICLYITGHLEKIFTHEHRVELLRYMYNHQNEDGGWGLH 169


>At1g64050.1 68414.m07255 expressed protein
          Length = 668

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 484 FKVH--LQLPPPSPSRTVQSDS 425
           FK H  + LPPP P+RT+Q  S
Sbjct: 637 FKNHSRMMLPPPPPTRTLQKSS 658


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,066,901
Number of Sequences: 28952
Number of extensions: 270247
Number of successful extensions: 585
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)