Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0757
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    29   0.38 
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   1.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.2  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    27   1.2  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   6.2  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   8.2  

>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = +2

Query: 230 CQPVAFWLLSRHGSHNPEANETAELQQLVDLKNNIVTNYKNG----NFRNTNHRICTADF 397
           C+     LL RHGS NP  + TA         NN      NG    NF    + +C    
Sbjct: 58  CEIQQVHLLQRHGSRNPTGDVTATDVYSSQYLNNFQEKLLNGSIPVNFSYPENPLC---- 113

Query: 398 NLLERWNWKQNSSTAGDLTSDG 463
             +++W    ++  A  L+S G
Sbjct: 114 -FIKQWTPVIDAENADQLSSRG 134


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 251 LLSRHGSHNPEANETA---ELQQLVDLKNNIVTN 343
           LL RHGS NP  ++TA      Q +D+  N + N
Sbjct: 65  LLQRHGSRNPTGDDTATDVSSAQYIDIFQNKLLN 98


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 113 ADEICLTSEEDPYLLFGTKTAYIFSNRGIPNAKAHEVPGCQPVA 244
           A  I    E+  Y+L  T   Y++  + +P++ A +V GC  +A
Sbjct: 483 APSIYYGDEQGFYVLDNTANNYLYGRQAMPSSIAWKVHGCYALA 526


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 266 GSHNPEANETAELQQLVDLKNNIVTNYKNGNFRNTN 373
           G   P+ +  A   QL +L  N + N  NGN  N N
Sbjct: 275 GGGMPDLSSLANNPQLQNLARNFMNNNNNGNTDNNN 310


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 77  AFILLMAALCARADEICLTSEEDPYLLFGTKTA 175
           AFI+++  LC R     LT     Y+ FG K A
Sbjct: 85  AFIIIIVELCERFAYYGLTVPFQNYMQFGPKDA 117


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 218 EVPGCQPVAFWLLSRHGSHNPEANETAELQQLVDLKNNIVTNYKNGN 358
           +V  C    + L+  H   +P  N+++    L  LKN I+ ++  GN
Sbjct: 92  DVISCSCTIYPLVFLHCCTSP--NDSSTWDTLTKLKNEIINDFDKGN 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,770
Number of Sequences: 5004
Number of extensions: 36474
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)