Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0757
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215...    29   2.0  
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616...    29   2.0  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    28   3.5  
06_01_0769 - 5745324-5746970                                           27   8.2  

>09_01_0144 -
           2158924-2158962,2159180-2159315,2159393-2159499,
           2159594-2160055,2162755-2162836,2164222-2164346,
           2164555-2164623,2164935-2165056,2165823-2165856
          Length = 391

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 234 WHPGTSCALAFGMPRLEKMYAVFVPNSKYGSSSDVRQISSARA--HKAAISRMKAHRIF 64
           W P + CA+A    R ++++  F PN   G+   V ++   ++  H+ ++ R++   IF
Sbjct: 329 WEPCSMCAMALVHQRFKRIFYAF-PNPITGALGSVYRLHGEKSLNHRYSVFRVRVADIF 386


>02_05_1094 +
           34060262-34060385,34061256-34061428,34061505-34061686,
           34061789-34062073,34062160-34062218,34062349-34062385,
           34062485-34062556,34063613-34063937,34064027-34064410
          Length = 546

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 308 QLVDLKNNIVTNYKNGNF 361
           QLV+L N ++TN  NGNF
Sbjct: 358 QLVNLVNQVITNVSNGNF 375


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 305 QQLVDLKNNIVTNYKNGNFRNTNH--RICTADFNLLERWNWKQNSSTAGDLTSDG 463
           + + D K  + T     N   + H  + C+A F+ L   N   +SSTA D  S G
Sbjct: 346 ESVPDTKPVVATRLNCENLVESTHTQKDCSASFSALSSANKADDSSTASDTKSSG 400


>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 356 NFRNTNHRICTADFNLLERWNW 421
           + R  NH  C  D  +L+R+NW
Sbjct: 254 HLRLQNHTFCEEDHRVLDRFNW 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,341,956
Number of Sequences: 37544
Number of extensions: 260392
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)