Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0757
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)       37   0.008
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.097
SB_38343| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.4e-40)       33   0.13 
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     29   1.6  
SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7)                     28   3.6  
SB_11172| Best HMM Match : LTXXQ (HMM E-Value=1.9)                     28   3.6  
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)                      28   4.8  
SB_48373| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)
          Length = 448

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = +2

Query: 83  ILLMAALCARADEICLTSEEDPYLLFGTKTAYIFSNRGIPNAKAHEVPGCQPVAFWLLSR 262
           +L ++ L      + L+  E  Y  F +KT Y   N      K  E  GC  V   L++R
Sbjct: 1   MLAVSTLILVLSFVLLSQGEGHYRNFASKTRYYEPNLEEDIKKERE-GGCSAVHMSLVAR 59

Query: 263 HGSHNPEANETAELQQLVDLKNNIVTNY--KNGN 358
           HG+ NP   +  ++Q+  +  + + + +  K GN
Sbjct: 60  HGTRNPSKRDVKKIQRTTEAIDQLFSGHPVKIGN 93


>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +2

Query: 257 SRHGSHNPEANETAELQQLVDLKNNIVTNYKNGNFRNTNHRICTADFNLLERWNWKQNSS 436
           S + ++N  +N    +    +  NN  T     N RN N+ I T++ N    +N  +N +
Sbjct: 65  SNYTTNNNHSNNNYTIDNKDNSSNNNYTINNKNNSRNNNYTISTSNNNYTTNYNKSKNFT 124

Query: 437 TAGDLTSDGYVTT 475
           T    T+    TT
Sbjct: 125 TRTKTTTSETTTT 137


>SB_38343| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.4e-40)
          Length = 456

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 158 FGTKTAYIFSNRGIPNAKAHEVPGCQPVAFWLLSRHGSHNPEANE----TAELQQLVDLK 325
           +G+KT Y   N     ++    PGC+PV   +L+RHG   P +++     A LQ+L  L 
Sbjct: 20  YGSKTPYNHGNL----SEVETPPGCKPVHINMLARHGERYPSSDDLKAFAAFLQKLNVLH 75

Query: 326 N 328
           N
Sbjct: 76  N 76


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 198 MPRLEKMYAVFVPNSKYGSSSDVRQISSARAHKAAISR-MKAHRIFSR 58
           M +L+ +YA FV  S   S+  + +   A +H+A + R M+ H++  R
Sbjct: 695 MEQLQTLYATFVQQSAAQSARALEKAEEASSHEARLRRYMQEHKLQPR 742


>SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7)
          Length = 783

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 CQPVAFWLLSRHGSHNPEANETAELQQLVDLKN 328
           C+PVA +LLS  G H    +     Q+ VD  N
Sbjct: 68  CKPVASYLLSGRGKHGKGRSHRQTPQEYVDTHN 100


>SB_11172| Best HMM Match : LTXXQ (HMM E-Value=1.9)
          Length = 142

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 108 LEPTRSALRLKRTHICYSERRPRTSSPIVASQTL 209
           L P RS LR+       S+RR R S+P++A+  +
Sbjct: 21  LPPRRSTLRVSHLRDTPSQRRARNSAPMMANSVV 54


>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 147 HI-CYSERRPRTSSPIVASQTLRHMKYQDANP 239
           HI CY  R  R+SSP        H +Y ++NP
Sbjct: 2   HITCYLPREIRSSSPSPGRSANPHCRYNESNP 33


>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
          Length = 889

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 195 PRLEKMYAVFVPNSKYGSSSDV 130
           P  +KM+ V+V N++YG  SD+
Sbjct: 814 PGYDKMHTVYVWNAQYGDGSDI 835


>SB_48373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 316 RSKEQHRHELQEWKLQEH*SSNLHGR 393
           R++ QH  ELQ+W++ +     LHG+
Sbjct: 102 RTQSQHLQELQDWEIVKQLKFILHGQ 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,317,553
Number of Sequences: 59808
Number of extensions: 299953
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)