Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0757
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein ...    29   1.3  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    29   1.7  
At5g02940.1 68418.m00237 expressed protein                             29   2.2  
At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-contain...    28   3.9  
At1g76550.1 68414.m08908 pyrophosphate--fructose-6-phosphate 1-p...    28   3.9  
At1g09870.1 68414.m01111 histidine acid phosphatase family prote...    27   5.2  
At3g28080.2 68416.m03506 nodulin MtN21 family protein similar to...    27   6.9  
At3g28080.1 68416.m03505 nodulin MtN21 family protein similar to...    27   6.9  
At2g29560.1 68415.m03590 enolase, putative similar to enolase [S...    27   6.9  
At2g07320.1 68415.m00839 SWIM zinc finger family protein contain...    27   6.9  
At5g44700.1 68418.m05477 leucine-rich repeat transmembrane prote...    27   9.1  
At5g04870.1 68418.m00510 calcium-dependent protein kinase isofor...    27   9.1  
At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-contain...    27   9.1  
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    27   9.1  

>At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 398

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 236 PVAFWLLSRHGSHNPEANETAELQQLVDLKNNIVTNYKNGNFRNTNHRI 382
           P+ F ++    SH P+A E  E   LV  + ++     N N +N N+ +
Sbjct: 31  PIPFSIIPPMSSHEPDAEE--ESTSLVSKEKSLNDEINNNNIKNNNNTL 77


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 269 SHNPEANETAE-LQQLVDLKNNIVTNYKNGNFRNTNHRICTADFNLLERW 415
           S N E   +A  LQQL  +KNN   +     F N NH +      LL  W
Sbjct: 415 SSNTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHW 464


>At5g02940.1 68418.m00237 expressed protein 
          Length = 813

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 478 LRRHVSVAGEIAGRATVLFPVPTFQQVKVGRADSMISVPEV 356
           LRR V++ G I G   ++ PVP  + V +   DS+I + E+
Sbjct: 766 LRREVAI-GYIKGGKKIINPVPKTEPVSLEMEDSLIVISEL 805


>At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           weak similarity to SP|P79245 Steroidogenic acute
           regulatory protein, mitochondrial precursor (StAR) {Ovis
           aries}; contains Pfam profiles PF01852: START domain,
           PF00169: PH domain
          Length = 719

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 356 NFRNTNHRICTADFNLLERWNWKQNSSTAGDLTSDGYVTTQQ 481
           N +  +HRI  A FN+ E   WK+      D   D  V + Q
Sbjct: 80  NKKEKHHRITMAAFNIQEALMWKEKIECVIDQHQDSLVPSGQ 121


>At1g76550.1 68414.m08908 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase alpha subunit, putative /
           pyrophosphate-dependent 6-phosphofructose-1-kinase,
           putative strong similarity to SP|Q41140
           Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           alpha subunit (EC 2.7.1.90) (PFP) (PPI-PFK) {Ricinus
           communis}; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 617

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 381 SARPTLTCWNVGTGNRTVARPAISPAT 461
           SA  T+  W+  +G+ T+ RP I PA+
Sbjct: 485 SAMMTVKRWSQNSGSTTIGRPVIHPAS 511


>At1g09870.1 68414.m01111 histidine acid phosphatase family protein
           contains Pfam profile PF00328: Histidine acid
           phosphatase; similar to multiple inositol polyphosphate
           phosphatase (GI:4105496)[Mus musculus]; EST gb|R64758
           comes from this gene
          Length = 487

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 164 TKTAYIFSNRGIPNA-KAHEVPG-CQPVAFWLLSRHGSHNPEANETAELQQL 313
           T T Y  S     N  +   VP  C P+   L++RHG+ +P      EL+ L
Sbjct: 31  TVTRYSTSKDVTQNLIEGSNVPSECTPIHLNLVARHGTRSPTKKRLRELESL 82


>At3g28080.2 68416.m03506 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 350

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 289 VSFRVMRAVTTEEPKGYGLASWYFMCLSVWDATIGEDVRGLRSE*QIWVL 140
           VSF +   +  E P+ + ++  Y +C+S+  + IG  V   ++   IW++
Sbjct: 195 VSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVE--KNNPSIWII 242


>At3g28080.1 68416.m03505 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 358

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 289 VSFRVMRAVTTEEPKGYGLASWYFMCLSVWDATIGEDVRGLRSE*QIWVL 140
           VSF +   +  E P+ + ++  Y +C+S+  + IG  V   ++   IW++
Sbjct: 203 VSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVE--KNNPSIWII 250


>At2g29560.1 68415.m03590 enolase, putative similar to enolase
           [Spinacia oleracea] gi|8919731|emb|CAB96173
          Length = 475

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 478 LRRHVSVAGEIAGRATVLFPVPTFQQVKVGR-ADSMISVPEVSI 350
           L +H+S   +++GRA ++ PVP F  +  G+ A +  ++ E+ I
Sbjct: 172 LCKHLS---DLSGRANMVLPVPAFTVLSGGKHASNTFAIQEIMI 212


>At2g07320.1 68415.m00839 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 534

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 230 CQPVAFWLLSRHGSHNPEANETAELQQLVDLKNNIV 337
           C     W+L+  G  NPEAN   EL Q  ++K  ++
Sbjct: 182 CFKTKTWVLTYKGIVNPEAN-ALELDQSEEVKERVI 216


>At5g44700.1 68418.m05477 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1252

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 245 FWLLSRHGSHNPEANETAELQQLVDLKNNIVTNYK 349
           F+L    G  + +  +  +LQ L++LKN+ +TN K
Sbjct: 11  FFLCFSSGLGSGQPGQRDDLQTLLELKNSFITNPK 45


>At5g04870.1 68418.m00510 calcium-dependent protein kinase isoform
           AK1 (AK1) identical to calcium-dependent protein kinase,
           isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 610

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +2

Query: 254 LSRHGSHNPEANETAELQQLVDLKNNIVTNYKNGNFRNTNHRICTADFNLLERWNWKQNS 433
           L R G+ N + +E  +L Q  D+ N+   +YK            T   N +ER +    +
Sbjct: 480 LKRVGA-NLKESEILDLMQAADVDNSGTIDYKE-------FIAATLHLNKIEREDHLFAA 531

Query: 434 STAGDLTSDGYVTTQQLAQA 493
            T  D    GY+T  +L QA
Sbjct: 532 FTYFDKDGSGYITPDELQQA 551


>At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 718

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 356 NFRNTNHRICTADFNLLERWNWKQNSSTAGDLTSDGYVTTQQ 481
           N +  +HRI  A FN+ E   WK+   +  D   +  V   Q
Sbjct: 80  NKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQ 121


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 127 ADLVGSSAQSCHQQD--EGTPHLFAGLMFGI 41
           A  +G +  +   QD  EGTPHL  GL+F I
Sbjct: 198 AKAIGCTVVNIGTQDIAEGTPHLVLGLIFQI 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,408,281
Number of Sequences: 28952
Number of extensions: 198855
Number of successful extensions: 529
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)