Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0756
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    44   0.003
UniRef50_Q0G0P2 Cluster: Glutamate-ammonia-ligase] adenylyltrans...    36   0.96 
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    34   2.2  
UniRef50_Q229D9 Cluster: Putative uncharacterized protein; n=3; ...    34   2.9  
UniRef50_P59736 Cluster: Phospho-2-dehydro-3-deoxyheptonate aldo...    34   2.9  
UniRef50_Q12887 Cluster: Protoheme IX farnesyltransferase, mitoc...    33   6.7  
UniRef50_Q8PS80 Cluster: Conserved protein; n=3; Methanosarcina|...    32   8.9  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 21/25 (84%), Positives = 21/25 (84%)
 Frame = +1

Query: 199 MGDGNHSTSGRPYARLPTRAIKKKL 273
           MGDGNHS SGRPYA LPTRA K KL
Sbjct: 1   MGDGNHSPSGRPYASLPTRA-KMKL 24


>UniRef50_Q0G0P2 Cluster: Glutamate-ammonia-ligase]
           adenylyltransferase; n=2; Aurantimonadaceae|Rep:
           Glutamate-ammonia-ligase] adenylyltransferase -
           Fulvimarina pelagi HTCC2506
          Length = 1007

 Score = 35.5 bits (78), Expect = 0.96
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +1

Query: 172 ALPLALLKSMGDGNHSTSGRPYARLPTRAIKKKLFHADEVAGKSYLINNIPF----FLLL 339
           A+PLA+   MG   +  SGR + R     IK +    D  AGK++L    PF    +L  
Sbjct: 264 AMPLAISTDMGMSYYEGSGRNWER--AAMIKARTIAGDLKAGKAFLAELAPFVWRKYLDF 321

Query: 340 ESLGDVQDI 366
            ++ D+QD+
Sbjct: 322 AAIADIQDM 330


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +3

Query: 153  SGRQWFGSALGIAEVHGRR 209
            SGRQ  GSA GIAEVHGRR
Sbjct: 968  SGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q229D9 Cluster: Putative uncharacterized protein; n=3;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 466

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +1

Query: 247 PTRAIKKKLFHADEVAGKSYLINNIPFFLLLESLGDVQDIHRLVFFLL 390
           P   I++K +  +E A K+YL+ N   F L+E   D+Q++ RL+ + L
Sbjct: 336 PLNLIQRKYYIKNEEARKNYLMYNDYSFFLIEFDIDIQELQRLIEYRL 383


>UniRef50_P59736 Cluster: Phospho-2-dehydro-3-deoxyheptonate
           aldolase, Trp-sensitive; n=152; cellular organisms|Rep:
           Phospho-2-dehydro-3-deoxyheptonate aldolase,
           Trp-sensitive - Shigella flexneri
          Length = 348

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +1

Query: 214 HSTSGRPYARLPTRAIKKKLFHADEVAGKSYLIN--NIPFFLLLE-SLGDVQDIHR 372
           + TSG PY  +  R  KK  +HAD++A     ++  ++P  L+++ S G+ Q  HR
Sbjct: 220 YQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHR 275


>UniRef50_Q12887 Cluster: Protoheme IX farnesyltransferase,
           mitochondrial precursor; n=28; Euteleostomi|Rep:
           Protoheme IX farnesyltransferase, mitochondrial
           precursor - Homo sapiens (Human)
          Length = 443

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 378 FFFTICLK-LVRISIIITPVSAVK*SCVPVDVWSSFTGKICRGSFL 512
           F +T C   L RISI  T V AV  +  PV  W++ TG +  G+FL
Sbjct: 268 FLYTCCYTPLKRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFL 313


>UniRef50_Q8PS80 Cluster: Conserved protein; n=3;
           Methanosarcina|Rep: Conserved protein - Methanosarcina
           mazei (Methanosarcina frisia)
          Length = 860

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -1

Query: 430 GVIMILILTSFKHIVKKKRVCECPEHPLRIPAIKKKEYYLSNNFCPRLRPRGIVFFLLP 254
           G++++L+L ++ ++  KK   E   + +RIP  K     L  +    L P  I++ LLP
Sbjct: 176 GILLLLLLAAYFYLSFKKHELELKGYKIRIPEPKIALMQLGLSSGDYLLPGSIIYLLLP 234


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,023,087
Number of Sequences: 1657284
Number of extensions: 11210694
Number of successful extensions: 24733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24729
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)