Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0756
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   6.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   6.3  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   8.4  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 241 EHTAYLMLSGYRRPWTSAMPRAEPNHCLPL 152
           E T ++ + G   PWT+      P H +PL
Sbjct: 405 EKTKFIFVPGPNDPWTTNGISLMPKHSIPL 434


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 234 VCSSAYKGNKKKTIPRGRSRGQK 302
           VC  +Y+GN+KK I  G +   K
Sbjct: 54  VCKLSYEGNRKKRIYNGSAEAGK 76


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 446 LNGRNGSNNDTYS 408
           L+G N SNNDTYS
Sbjct: 106 LDGMNHSNNDTYS 118


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 448 YLTAETGVIMILILT--SFKHIVKKKRVCECPE 356
           YL+    ++   IL   +FKH    +R+ +CPE
Sbjct: 20  YLSVANKIMFYCILNERAFKHYKTYRRITDCPE 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,538
Number of Sequences: 5004
Number of extensions: 48309
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)