Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0756
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59293| Best HMM Match : 7tm_1 (HMM E-Value=0)                       32   0.40 
SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.8  
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  

>SB_59293| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 326

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 212 TTQHQVGRMLVCLQGQ*KKNYSTRTKSRAKVI**IIFLFFYCWNP 346
           T +HQ+ +M++ +QG+ K+   ++    AK +  +I  F  CW P
Sbjct: 161 TARHQIKKMILTVQGKPKRFLLSKEIKAAKTVAVVIGGFVICWCP 205


>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 795

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 209 VTTQHQVGRMLVCLQGQ*KKNYSTRTKSRAKVI**IIFLFFYCWNP 346
           +T +HQ  ++ + ++G+  + + T+     K +  +I  F  CW+P
Sbjct: 196 LTARHQAKQIKLTIKGKTHRFFLTKELKATKTLAVVIGAFLVCWSP 241


>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 502 PRQIFPVKLLHTSTGTHDYLTAETGVIMILILT 404
           P + FPV++L+T     DYL A    +M + LT
Sbjct: 473 PGRTFPVEILYTKEAESDYLDAALITVMQIHLT 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,099,443
Number of Sequences: 59808
Number of extensions: 348126
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)