Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0756
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06620.1 68415.m00734 hypothetical protein                          33   0.11 
At2g06700.1 68415.m00748 hypothetical protein                          31   0.58 
At3g42610.1 68416.m04423 hypothetical protein                          29   1.8  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    29   3.1  
At5g28484.1 68418.m03464 hypothetical protein                          28   4.1  
At4g31880.1 68417.m04531 expressed protein                             28   5.4  
At2g12130.1 68415.m01306 hypothetical protein                          28   5.4  
At5g18440.1 68418.m02172 hypothetical protein                          27   9.5  
At4g21180.1 68417.m03063 DNAJ heat shock N-terminal domain-conta...    27   9.5  
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    27   9.5  

>At2g06620.1 68415.m00734 hypothetical protein
          Length = 161

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -2

Query: 222 C*VVTVAHGLQQCQGQSQTTAYRCCYLGITLNYT 121
           C  VTVAHGL      S T AY C Y G+ L  T
Sbjct: 93  CNFVTVAHGLTMLGSISPTDAYACFYHGLFLTAT 126


>At2g06700.1 68415.m00748 hypothetical protein
          Length = 217

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -2

Query: 222 C*VVTVAHGLQQCQGQSQTTAYRCCYLGITLNYT 121
           C  VTVAHGL      S   AY C Y G+ L  T
Sbjct: 93  CNFVTVAHGLTMLGSISPIDAYACFYHGLFLTAT 126


>At3g42610.1 68416.m04423 hypothetical protein
          Length = 202

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 222 C*VVTVAHGLQQCQGQSQTTAYRCCYLGITLNYT 121
           C  VTVAHG+      S T AY C   G+ L  T
Sbjct: 93  CNFVTVAHGITMLGSISATDAYACFLHGLFLTAT 126


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 508 NDPRQIFPVKLLHTSTGTHDYLTAETGVIMILILTS 401
           N P + FPV +L++ T   DY+ A     M + +TS
Sbjct: 700 NIPGRTFPVNILYSKTPCEDYVEAAVKQAMTIHITS 735


>At5g28484.1 68418.m03464 hypothetical protein
          Length = 187

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 222 C*VVTVAHGLQQCQGQSQTTAYRCCYLGITLNYT 121
           C  VTVAHGL      S   AY C   G+ L  T
Sbjct: 93  CNFVTVAHGLTMLSSISPIDAYACFSHGLFLTAT 126


>At4g31880.1 68417.m04531 expressed protein
          Length = 873

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 438 AVK*SCVPVDVWSSFTGKICRGSF 509
           AVK S VP+D +S+    IC G+F
Sbjct: 232 AVKSSGVPLDKYSNIVASICEGTF 255


>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 222 C*VVTVAHGLQQCQGQSQTTAYRCCYLGITLNYT 121
           C  +TVAHGL      S   AY C   G+ L  T
Sbjct: 93  CNFITVAHGLTMLSSISPIDAYACFSHGLFLTAT 126


>At5g18440.1 68418.m02172 hypothetical protein
          Length = 451

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 412 ILTSFKHIVKKKRVCECPEHPLRIPAIKKKE 320
           +L  F+ +V    + E PE PL++P I  KE
Sbjct: 385 LLQVFRFMVMNSLLKEFPEQPLKLPLITVKE 415


>At4g21180.1 68417.m03063 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 661

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 129 LALCPSNNSGRQWFGSALGIAEV 197
           +A+ P N  GR W   ALG+ E+
Sbjct: 343 MAVIPRNEQGRGWLRPALGVMEL 365


>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 178 PLALLKSMGDGNHSTSGRPYARLPTRAIKKKLFHADEVAGK 300
           PL  +KS  DG  + S   Y RLP  +      H  + AG+
Sbjct: 389 PLEPIKSGKDGKDAESNSFYGRLPRPSTTDTHHHQQQAAGR 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,106
Number of Sequences: 28952
Number of extensions: 239004
Number of successful extensions: 484
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)