Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0755
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...   190   2e-49
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    34   0.014
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    29   0.69 
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    26   3.7  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   3.7  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   4.9  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   4.9  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   6.4  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   8.5  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.5  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.5  

>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score =  190 bits (462), Expect = 2e-49
 Identities = 89/141 (63%), Positives = 104/141 (73%)
 Frame = +3

Query: 177 TVDTKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLV 356
           T+ TKPYEGQ+PGTSGLRKKV VF Q NY ENF+Q  +DV + S  G+ LVVGGDGRY  
Sbjct: 4   TIPTKPYEGQRPGTSGLRKKVTVFEQPNYVENFVQATMDVVEPSAKGAHLVVGGDGRYFN 63

Query: 357 KEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDF 536
              +  I  I+A NGV K+IVG NG LSTPA S+IIRKYK  GGI+LTASHN GG   DF
Sbjct: 64  FHAIQVIAAIAAGNGVEKIIVGTNGYLSTPAASHIIRKYKLTGGIILTASHNAGGPKNDF 123

Query: 537 GIKFNCSNGGPASDATTDAIY 599
           GIK+N  NGGPA ++ T+ IY
Sbjct: 124 GIKYNLGNGGPAPESVTEKIY 144


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
 Frame = +3

Query: 213 GTSGLRKKVKV-FVQENY------TENFIQCILD-VNKTSLIGSTLVVGGDGRYLVKEVV 368
           GTSGLR ++   F + N       ++ F + +L  V   + +G  +V+G D R+      
Sbjct: 48  GTSGLRAEIGAGFARMNCLTVIQASQGFAEYLLQTVPSAAKLG--VVIGHDHRHKSNTFA 105

Query: 369 DKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKF 548
                +    G          ++ TP V + ++   T  G+++TASHNP   +   G K 
Sbjct: 106 RLTAAVFLQKGFKTYFFDH--LVHTPLVPFAVKTLGTAAGVMITASHNPAAYN---GYKV 160

Query: 549 NCSNG 563
              NG
Sbjct: 161 YWGNG 165


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 468 KYKTLGGIVLTASHNPGGVDEDFGIKFNCSNGG 566
           K KT+G +++TASHNP    ED G+K   ++GG
Sbjct: 40  KGKTIG-VMITASHNP---VEDNGVKIIDADGG 68


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 348 YLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTL 482
           Y +K++  K +KI   N +   +V  N +L      +   KYK L
Sbjct: 246 YDMKQIYRKNLKIIGCNSLLLSLVESNSLLKNMVAKFEAGKYKVL 290


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +3

Query: 360 EVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFG 539
           +  D  I     NG   + +G  G+        ++R+Y +LG   +T +HN    D  F 
Sbjct: 122 DCADDAIAAFRNNGKIAIALGVEGLHQVDTSLAVLRQYYSLGVRYITLTHN---CDNPFA 178

Query: 540 IKFNCSNGG 566
              +   GG
Sbjct: 179 TAASSITGG 187


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 347 PSVSSDNQRRSYQRGFIHVQNALNKILRVVFLNENFNFFT 228
           PS S  NQ+RSY    +  +N   K+ R +FL     FF+
Sbjct: 516 PSSSQINQKRSYSTSSLFSKN--KKMNRSLFLKGGKRFFS 553


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 275 KILRVVFLNENFNFFTQSTCARLLALIRFSVNRYTVRH 162
           K+L +VFL+  F  + QS C RL ++    + R    H
Sbjct: 104 KLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREH 141


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 465 RKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNGGPASDATT 587
           ++Y  L GI++T+++    +    G   N SN GP     T
Sbjct: 475 KQYMKLSGIIVTSNYRKNVLHLVVGCGINVSNLGPTVSLNT 515


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 589 SVVASEAGPPLLQLNFMPKSSSTPPGLWDAVRTIPPR 479
           S V ++  PP  Q N+ P +SS+ P +       PP+
Sbjct: 200 SAVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQ 236


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
 Frame = +3

Query: 237 VKVFVQENYTENFIQCILD------------VNKTSLIGSTLVVGGDGRYLVKE--VVDK 374
           VK F  +NY + F+ C ++              K S  GS   +       +K+  VV++
Sbjct: 396 VKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKVSAFGSQCTLSDKFLKAIKKSSVVEE 455

Query: 375 IIKISAANGVSKLIVGQNGILS 440
           ++K + A    +L  G  G+ S
Sbjct: 456 VLKFATAKADQQLSKGDGGLRS 477


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 456 YIIRKYKTLGGIVLTASHNPGGVDED-FGIKFNCSNGGPASDATTDAI 596
           Y+I+KY+ L  IV+  S+      E+   I  +  +  P+  AT DA+
Sbjct: 129 YVIKKYQNLKNIVVRLSNGTEACKEEAVLINAHVDSTLPSPGATDDAL 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,121
Number of Sequences: 5004
Number of extensions: 49452
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)