Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0755
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117...   160   9e-40
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581...   146   2e-35
02_04_0192 + 20795659-20796309                                         30   1.6  
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947...    29   2.8  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    29   2.8  
03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484     28   5.0  
01_05_0648 + 23915469-23915898,23916551-23916619,23916956-239173...    28   6.5  
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603...    27   8.7  
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607...    27   8.7  

>03_05_0898 +
           28610123-28610203,28611190-28611271,28611666-28611721,
           28612253-28612366,28612484-28612546,28612633-28612752,
           28612850-28612950,28613097-28613156,28613243-28613342,
           28613421-28613575,28613661-28613756,28614269-28614403,
           28614510-28614573,28614648-28614729,28615038-28615213,
           28615302-28615378,28615637-28615769,28615939-28616055,
           28616394-28616398,28616564-28616684,28616711-28617751
          Length = 992

 Score =  160 bits (388), Expect = 9e-40
 Identities = 78/145 (53%), Positives = 101/145 (69%), Gaps = 7/145 (4%)
 Frame = +3

Query: 186 TKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYLVKE 362
           T P++GQKPGTSGLRKKV VF Q +Y +NF+Q   +      + G+T+VV GDGRY  K+
Sbjct: 11  TTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVVSGDGRYFSKD 70

Query: 363 VVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRK------YKTLGGIVLTASHNPGGV 524
            V  I K++AANGV ++ VGQN ++STPAVS +IR+       K  G  +LTASHNPGG 
Sbjct: 71  AVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGP 130

Query: 525 DEDFGIKFNCSNGGPASDATTDAIY 599
            EDFGIK+N  NGGPA ++ TD I+
Sbjct: 131 TEDFGIKYNMENGGPAPESVTDKIF 155


>10_02_0145 -
           5817684-5817751,5817850-5817955,5818145-5818222,
           5818334-5818380,5818476-5818557,5818688-5818829,
           5819027-5819142,5819244-5819318,5819413-5819531,
           5820569-5820636,5820739-5820803,5820887-5820968,
           5821462-5821514,5821589-5821711,5821986-5822054,
           5822581-5822649,5822735-5822786,5823423-5823475,
           5823562-5823654,5823762-5823806,5824616-5824777
          Length = 588

 Score =  146 bits (353), Expect = 2e-35
 Identities = 69/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
 Frame = +3

Query: 234 KVKVFVQENYTENFIQCILD-VNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSK 410
           KVKVF QENY  N+IQ + + +     +G TLV+GGDGRY  K+    I KI+A NGV K
Sbjct: 54  KVKVFQQENYLANWIQALFNSLPPEDYVGGTLVLGGDGRYFNKDAAQIITKIAAGNGVGK 113

Query: 411 LIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNGGPASDATTD 590
           ++VG+NG+LSTPAVS +IRK +  GG +++ASHNPGG D D+GIKFN S+G PA +  TD
Sbjct: 114 ILVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIKFNYSSGQPAPETITD 173

Query: 591 AIY 599
            IY
Sbjct: 174 QIY 176


>02_04_0192 + 20795659-20796309
          Length = 216

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -3

Query: 541 MPKSSSTPPGLWDAVRTIPPRVLYFLII*DTAGV--DSIPFCPT-INFETPFAALILIIL 371
           MP SSS PP    A    P R     ++  +AG    S  F  T  +  +PF + +    
Sbjct: 1   MPSSSSPPPPPPPATTATPRRRRRRRLLPSSAGGGGSSSSFSSTNSSSSSPFVSFLPPPT 60

Query: 370 STTSFTRYLPSPPTTSVDP 314
           S + F R+LPSP   S  P
Sbjct: 61  SPSPFHRFLPSPLRASSVP 79


>09_02_0450 +
           9468495-9468528,9468947-9469062,9470031-9470858,
           9470955-9471107,9471194-9471604
          Length = 513

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 366 VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 467
           +D+++K  +  GV  L +  NG+ ST A SY+ R
Sbjct: 105 IDRVMKKHSGIGVKALTIEFNGLFSTKARSYLER 138


>03_02_0859 - 11853928-11854138,11854225-11854683,11854760-11854991,
            11855064-11855187,11855276-11855960,11856429-11856735,
            11856832-11858188
          Length = 1124

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 223  PLVPGFWPSYGLVSTVTLLDMILVIK*VSSKGHELFKRISRH 98
            P++PGFW  Y ++ T     ++L +  V    H + K I  H
Sbjct: 1049 PILPGFWAIYKVMGTGLFWALLLAVIVVGMIPHFVAKAIREH 1090


>03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484
          Length = 355

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 402 VSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGI 542
           V KL   Q  + S   V   I   K + G+V+   H P   DED G+
Sbjct: 157 VQKLSTKQPSLESRQMVLQEIAAEKGIAGVVVHVVHEPSSHDEDSGL 203


>01_05_0648 +
           23915469-23915898,23916551-23916619,23916956-23917315,
           23918435-23918973
          Length = 465

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 403 TPFAALILIILSTTSFTRYLPSPPTT-SVDPIKEVLFTSKM 284
           T FA      L +    R+LP PP T ++ P+  VLF+S M
Sbjct: 136 TLFADTCRADLKSLPEMRFLPDPPPTPTISPVVTVLFSSCM 176


>11_06_0696 +
           26358713-26359779,26359826-26360110,26360177-26360356,
           26360516-26360585,26361051-26361950
          Length = 833

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 294 VNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKY 473
           +  +SL+   LV G +  +  +EVVD ++   A N     IVG  G+  T     I    
Sbjct: 160 IESSSLVEPNLV-GKEVVHACREVVDLVLAHKAKNVYKLAIVGTGGVGKTTLAQKIFNDK 218

Query: 474 KTLG 485
           K  G
Sbjct: 219 KLEG 222


>09_04_0696 -
           19559227-19559622,19559710-19559862,19559957-19560784,
           19561727-19561842,19562286-19562319
          Length = 508

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 366 VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 467
           +D++++  +  GV  L +  NG+ ST A SY+ R
Sbjct: 105 IDRVMEKHSGIGVKALTIEFNGLFSTKARSYLER 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,246
Number of Sequences: 37544
Number of extensions: 316988
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)