Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0755
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5477| Best HMM Match : M20_dimer (HMM E-Value=0.096) 34 0.10
SB_45229| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 3.8
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014) 28 5.1
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32) 28 6.7
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092) 28 6.7
SB_34249| Best HMM Match : fn3 (HMM E-Value=0) 27 8.8
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) 27 8.8
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_5477| Best HMM Match : M20_dimer (HMM E-Value=0.096)
Length = 543
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 333 GGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYI 461
G +YLVK V D++IK+ NGV ++ N + S P S++
Sbjct: 486 GQRSQYLVKLVTDRVIKMKPVNGVLHDVLTSNRVNSPPNHSFV 528
>SB_45229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 348 YLVKEVVDKIIKISAAN-GVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGV 524
YL E D ++++ + +L G GIL + + IR Y+T+ V++ P
Sbjct: 10 YLASEYGDLVVRLEGRHEDGQRLPAGGEGILGRDTMGHFIRNYQTMDAYVISQIPQPMEK 69
Query: 525 DEDF 536
D F
Sbjct: 70 DVSF 73
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3
Query: 150 ITRIMSNSVTVDTKPYEGQKPGTS---GLRKKVKVFVQENYTENFIQCILDVNKTSLIGS 320
+ R + ++++++ EG+K + GL KK K+ NY ++ D N LI
Sbjct: 1095 LVRSRESIMSLESQVVEGRKINETLNKGLEKKEKIIDDLNYQIKMLRKNFDANNQELI-- 1152
Query: 321 TLVVGGDGRYLVKEVVDKIIKISAANG 401
+ V DG K+ ++K +++AA G
Sbjct: 1153 SYKVRTDGLEAEKKEIEK--RLAAAQG 1177
>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
Length = 399
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -3
Query: 571 AGPPLLQLNFMPKSSSTPPGLWDAVRTIPPRV 476
A PP L N PK STPP VRT+ P V
Sbjct: 290 AKPPPLPRNPPPKDESTPPRTPRRVRTLYPCV 321
>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
Length = 318
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 258 NYTENFIQCI-LDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVS 407
N+T+ FI+ L NKT++ G +L E DK ++A NG++
Sbjct: 163 NFTKKFIEPFTLSENKTNVAAGVFADVGKLEFLFTENYDKPSLLAALNGIA 213
>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
Length = 1270
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = +3
Query: 345 RYLVKE-VVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGG 521
R+L KE V I +SA +VG + TP + I T+ L HN G
Sbjct: 475 RFLEKENVKSNNIAMSALAQCFTFLVGAVEDVCTPVSTRAIAMLDTIKASALKVGHNMGS 534
Query: 522 VDEDFGIKFNCSNGGPASDATTD 590
+ + N +GG D D
Sbjct: 535 IRNNGVETNNYDDGGGGGDDVDD 557
>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
Length = 2195
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +3
Query: 123 SCPLLDTYLITRIMSNSVTVDTKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNK 302
S P L+ L S +VT P + T+G VF QE++T N C++ V++
Sbjct: 1494 SSPPLNVTLTANDTSINVTWQPIP----EKNTNGDLLGYHVFYQESHTGNSTPCLVTVDR 1549
Query: 303 TSLIGSTLVVGGDGRYLV 356
+SL L + YLV
Sbjct: 1550 SSLAVQLLNLTPYTGYLV 1567
>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
Length = 712
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 296 HVQNALNKILRVVFLNENF-NFFTQSTCARLLALIRF 189
H A+N + ++F+ ENF N C RL LI F
Sbjct: 357 HANAAINPFMYIIFI-ENFRNALANHVCGRLTRLITF 392
>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2429
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 156 RIMSNSVTVDTKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLIGS 320
++ S +++D K GQK SGL++++++ V+ + I K S+ GS
Sbjct: 1047 KVKSPVLSIDLKDTSGQKLEISGLKEEIELIVEGPPDAKVLPPIASFLKPSVNGS 1101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,510,554
Number of Sequences: 59808
Number of extensions: 379564
Number of successful extensions: 1589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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