Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0755
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-2|AAA83163.1|  568|Caenorhabditis elegans Hypothetical pr...   190   9e-49
AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical ...    41   6e-04
AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical ...    41   6e-04
AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical ...    29   2.6  
U58735-4|AAC48144.1|  479|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    28   5.9  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF000298-7|AAC48256.1|  239|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U41533-2|AAA83163.1|  568|Caenorhabditis elegans Hypothetical
           protein R05F9.6 protein.
          Length = 568

 Score =  190 bits (462), Expect = 9e-49
 Identities = 97/148 (65%), Positives = 110/148 (74%), Gaps = 5/148 (3%)
 Frame = +3

Query: 174 VTVDTKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRY 350
           V   TKP+ GQKPGTSGLRK+V  F Q+NYTENF+Q ILD    S   GS LVVGGDGR+
Sbjct: 6   VETPTKPFAGQKPGTSGLRKRVPEFQQQNYTENFVQAILDAGLGSKKKGSQLVVGGDGRF 65

Query: 351 LVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRK----YKTLGGIVLTASHNPG 518
           L  E  + IIKI+AANG+S+LIVGQNG LSTPA+S +IRK        GGI+LTASHNPG
Sbjct: 66  LSMEATNVIIKIAAANGLSRLIVGQNGFLSTPALSNLIRKGHEGRVVDGGIILTASHNPG 125

Query: 519 GVDEDFGIKFNCSNGGPASDATTDAIYK 602
           G   DFGIKFNC NGGPA D  TDAIY+
Sbjct: 126 GPKGDFGIKFNCENGGPAPDQVTDAIYQ 153


>AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5b protein.
          Length = 459

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = +3

Query: 324 LVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTA 503
           + +G DGRY  +   +    +   N +   +  +  +  TP VS+   K     G+++TA
Sbjct: 93  VAIGFDGRYNSRRFAELSANVFVRNNIPVYLFSE--VSPTPVVSWATIKLGCDAGLIITA 150

Query: 504 SHNPGGVDEDFGIKFNCSNG 563
           SHNP    ED G K   SNG
Sbjct: 151 SHNP---KEDNGYKAYWSNG 167


>AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5a protein.
          Length = 595

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = +3

Query: 324 LVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTA 503
           + +G DGRY  +   +    +   N +   +  +  +  TP VS+   K     G+++TA
Sbjct: 93  VAIGFDGRYNSRRFAELSANVFVRNNIPVYLFSE--VSPTPVVSWATIKLGCDAGLIITA 150

Query: 504 SHNPGGVDEDFGIKFNCSNG 563
           SHNP    ED G K   SNG
Sbjct: 151 SHNP---KEDNGYKAYWSNG 167


>AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical
           protein Y46C8AR.1 protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 354 VKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIV-LTASHNPGGVDE 530
           V EV++K    + A   S LI+      +T  VS I+ K +   G+V   ASH P G   
Sbjct: 258 VFEVINKFYDNTQATCGSNLIILSKRYPNTADVSNIVLKVRKSQGMVNFLASHAPSGGTV 317

Query: 531 DFGIKFNCS 557
             G+   CS
Sbjct: 318 SQGLYDLCS 326


>U58735-4|AAC48144.1|  479|Caenorhabditis elegans Hypothetical
           protein F20B4.3 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 577 SEAGPPLLQLNFMPKSSSTPPGLWDA 500
           SEA P L +  F P+ +S PPGL +A
Sbjct: 130 SEASPILERQRFTPQQTSIPPGLAEA 155


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 327 VVGGDGRYLVKEV--VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 467
           VV GDGR +V  +   D++I +   +   +      G+L+TP   YIIR
Sbjct: 15  VVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIR 63


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 571 AGPPLLQLNFMPKSSSTPPGLWDAVRTI 488
           +GPP ++L  +P+S+S    L D +R+I
Sbjct: 519 SGPPTVRLTAVPESNSDRRSLMDQIRSI 546


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 LDVNKTSLIGSTLVVGGDGRYLVK 359
           L  N TS++G  +V   DGRYL K
Sbjct: 346 LPENCTSIVGDVVVDANDGRYLYK 369


>AF000298-7|AAC48256.1|  239|Caenorhabditis elegans Hypothetical
           protein W03D2.2 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 234 KVKVFVQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKIS 389
           K+K  +  ++T NF + I+      L     ++GGD  +L+  +   II ++
Sbjct: 56  KIKDLICFSFTSNFAKNIVGALNLKLYDIKCMMGGDAHHLLFNICKNIIYVT 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,664
Number of Sequences: 27780
Number of extensions: 284855
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)