Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0755
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.33 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 374 NY*D-QCSEWGFEIDSRTKWNTINSCCVL 457
           NY D +  +   EI +R K NT+ + CVL
Sbjct: 459 NYIDKETKDMNLEISTRPKSNTVENACVL 487


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 383 LNNFINNLFHEIPSVSSDNQRRSYQRGF 300
           LN F NN   +I S+S++ Q +    GF
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 515 GRCGRRLWHKVQLQ*RRPSFRCYHRCH 595
           G C   L HK+++    P + C  RC+
Sbjct: 453 GLCPYTLKHKIRVPPGTPIYECNKRCN 479


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 383 LNNFINNLFHEIPSVSSDNQRRSYQRGF 300
           LN F NN   +I S+S++ Q +    GF
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 595 MASVVASEAGPPLLQLNFMPKSSSTP 518
           +  V  S  GPP + L+  P+   TP
Sbjct: 120 LCEVPESRDGPPSVSLSSPPREPGTP 145


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +3

Query: 351 LVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYI 461
           L+  +V   + I   N  +K I+G +   +TP + ++
Sbjct: 2   LLYHIVGASVLICLLNETAKAIIGVDECQATPVIHFL 38


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 392 SEWGFEIDSRTKWNTINSCC 451
           S+W F++   TK   + +CC
Sbjct: 215 SKWDFKVIKATKVLKMYACC 234


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 375 FYQQPLSRDTFRLLRQPASILSKR 304
           +Y Q  SRD FR+     S +S R
Sbjct: 16  YYHQRCSRDWFRISAGCVSRISNR 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,982
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)