Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0755
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putati... 171 3e-43
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati... 171 4e-43
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 167 5e-42
At5g17530.2 68418.m02057 phosphoglucosamine mutase family protei... 34 0.063
At5g17530.1 68418.m02056 phosphoglucosamine mutase family protei... 34 0.063
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 30 1.4
At5g51110.1 68418.m06338 expressed protein 29 2.4
At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH, chlor... 29 2.4
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 29 2.4
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 27 7.2
At3g54200.1 68416.m05991 expressed protein hin1 protein, Nicotia... 27 7.2
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 27 7.2
At1g63270.1 68414.m07153 ABC transporter family protein 27 7.2
At5g37630.1 68418.m04532 chromosome condensation family protein ... 27 9.6
>At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93804 Phosphoglucomutase, cytoplasmic 1 (EC 5.4.2.2)
(Glucose phosphomutase 1) (PGM 1) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 585
Score = 171 bits (416), Expect = 3e-43
Identities = 85/148 (57%), Positives = 105/148 (70%), Gaps = 7/148 (4%)
Frame = +3
Query: 180 VDTKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYLV 356
V T P +GQKPGTSGLRKKVKVF Q NY ENF+Q + T + G+TLVV GDGRY
Sbjct: 9 VSTSPIDGQKPGTSGLRKKVKVFKQPNYLENFVQATFNALTTEKVKGATLVVSGDGRYYS 68
Query: 357 KEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRK------YKTLGGIVLTASHNPG 518
++ + I+K++AANGV ++ VGQN +LSTPAVS IIR+ K G +LTASHNPG
Sbjct: 69 EQAIQIIVKMAAANGVRRVWVGQNSLLSTPAVSAIIRERVGADGSKATGAFILTASHNPG 128
Query: 519 GVDEDFGIKFNCSNGGPASDATTDAIYK 602
G EDFGIK+N NGGPA ++ TD IY+
Sbjct: 129 GPTEDFGIKYNMENGGPAPESITDKIYE 156
>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
(Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 583
Score = 171 bits (415), Expect = 4e-43
Identities = 86/149 (57%), Positives = 105/149 (70%), Gaps = 7/149 (4%)
Frame = +3
Query: 177 TVDTKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYL 353
TV T P +GQKPGTSGLRKKVKVF Q NY ENF+Q + + G+TLVV GDGRY
Sbjct: 7 TVSTSPIDGQKPGTSGLRKKVKVFKQPNYLENFVQATFNALTAEKVKGATLVVSGDGRYY 66
Query: 354 VKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRK------YKTLGGIVLTASHNP 515
K+ V IIK++AANGV ++ VG+N +LSTPAVS +IR+ K G +LTASHNP
Sbjct: 67 SKDAVQIIIKMAAANGVRRVWVGKNTLLSTPAVSAVIRERSGADGSKATGAFILTASHNP 126
Query: 516 GGVDEDFGIKFNCSNGGPASDATTDAIYK 602
GG EDFGIK+N NGGPA ++ TD IY+
Sbjct: 127 GGPTEDFGIKYNMENGGPAPESITDKIYE 155
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 167 bits (406), Expect = 5e-42
Identities = 81/142 (57%), Positives = 105/142 (73%), Gaps = 1/142 (0%)
Frame = +3
Query: 177 TVDTKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILD-VNKTSLIGSTLVVGGDGRYL 353
++ TKP EGQK GTSGLRKKVKVF+++NY N+IQ + + + +TLV+GGDGRY
Sbjct: 71 SLPTKPIEGQKTGTSGLRKKVKVFMEDNYLANWIQALFNSLPLEDYKNATLVLGGDGRYF 130
Query: 354 VKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDED 533
KE IIKI+A NGV +++VG+ GILSTPAVS +IRK K GG +++ASHNPGG + D
Sbjct: 131 NKEASQIIIKIAAGNGVGQILVGKEGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYD 190
Query: 534 FGIKFNCSNGGPASDATTDAIY 599
+GIKFN S+G PA + TD IY
Sbjct: 191 WGIKFNYSSGQPAPETITDKIY 212
>At5g17530.2 68418.m02057 phosphoglucosamine mutase family protein
low similarity to phosphoglucomutase/phosphomannomutase
[Sphingomonas paucimobilis] GI:6103619; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 581
Score = 34.3 bits (75), Expect = 0.063
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Frame = +3
Query: 249 VQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQN 428
V E F Q +L K + VG D R + +++ + S GVS L V Q
Sbjct: 85 VTEAIAAAFGQWLLHKKKAESRRLRVSVGHDSRISAQTLLEAV---SRGLGVSGLDVVQF 141
Query: 429 GILSTPAV--SYIIRKYKTL----GGIVLTASHNPGGVDEDFGIKFNCSNGG 566
G+ STPA+ S + L G I++TASH P + G KF S+GG
Sbjct: 142 GLASTPAMFNSTLTEDESFLCPADGAIMITASHLPYNRN---GFKFFTSDGG 190
>At5g17530.1 68418.m02056 phosphoglucosamine mutase family protein
low similarity to phosphoglucomutase/phosphomannomutase
[Sphingomonas paucimobilis] GI:6103619; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 581
Score = 34.3 bits (75), Expect = 0.063
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Frame = +3
Query: 249 VQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQN 428
V E F Q +L K + VG D R + +++ + S GVS L V Q
Sbjct: 85 VTEAIAAAFGQWLLHKKKAESRRLRVSVGHDSRISAQTLLEAV---SRGLGVSGLDVVQF 141
Query: 429 GILSTPAV--SYIIRKYKTL----GGIVLTASHNPGGVDEDFGIKFNCSNGG 566
G+ STPA+ S + L G I++TASH P + G KF S+GG
Sbjct: 142 GLASTPAMFNSTLTEDESFLCPADGAIMITASHLPYNRN---GFKFFTSDGG 190
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 225 LRKKVKVFVQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVV 368
L KK Y ENFI + DV++T + +V+GGD L+ E++
Sbjct: 462 LYKKYNQLFDMAYAENFILPVGDVSETKSMYKEVVLGGDVWDLLDELM 509
>At5g51110.1 68418.m06338 expressed protein
Length = 220
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/92 (30%), Positives = 39/92 (42%)
Frame = -3
Query: 559 LLQLNFMPKSSSTPPGLWDAVRTIPPRVLYFLII*DTAGVDSIPFCPTINFETPFAALIL 380
L QL P SSS PP D RT+ +VL + I+ + AG I + LI
Sbjct: 99 LSQLQCSPVSSSQPPLSGDDARTLLHKVLGWSIVDNEAGGLKIRCMWKVRDFGCGVELIN 158
Query: 379 IILSTTSFTRYLPSPPTTSVDPIKEVLFTSKM 284
I + + PS S ++ LFTS +
Sbjct: 159 RIHKVAEASGHYPSLHLESPTQVRAELFTSSI 190
>At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLH) nearly identical to magnesium chelatase
subunit GI:1154627 from [Arabidopsis thaliana]; contains
Pfam profile: PF02514 CobN/magnesium chelatase family
protein
Length = 1381
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 231 KKVKVFVQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDK 374
K V V ++ Y + + + +NKTS S VVG YLV+E+ DK
Sbjct: 79 KIVYVVLEAQYQSSLSEAVQSLNKTSRFASYEVVG----YLVEELRDK 122
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 237 VKVFVQENYTENFIQCILDVNKTSLIGS-TLVVGGDGRYLVKEVVDKIIKISAANGVSKL 413
+K F + N EN + C K S I S T DGR L+ G++K
Sbjct: 115 LKTFAESNLPENVLDCCKTFEKPSPIQSHTWPFLLDGRDLI--------------GIAKT 160
Query: 414 IVGQNGILSTPAVSYIIRKYKTLGG 488
G+ PA+ ++++K K +GG
Sbjct: 161 GSGKTLAFGIPAIMHVLKKNKKIGG 185
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +3
Query: 285 ILDVNKTSLIGSTLVVGGDGRYLVKEVVD---KIIKISAANGVSKLIVGQNGILSTPAVS 455
I DV GS V+G D Y+++E D ++ + + + + + + +S
Sbjct: 568 ICDVLNGDAAGSKSVIGIDFHYIIEEEFDMNERVFEGMSNLQFLRFDCDHDTLQLSRGLS 627
Query: 456 YIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCSN 560
Y+ RK + L I + P V+ +F I+ N ++
Sbjct: 628 YLSRKLQLLDWIYFPMTCLPSTVNVEFLIELNLTH 662
>At3g54200.1 68416.m05991 expressed protein hin1 protein, Nicotiana
tabacum, PIR:T03265
Length = 235
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 388 LILIILSTTSFTRYLPSPPTTSVDPIKEVLFTSKMH*IKFSV*FS*TKTLTF-LRNPLVP 212
LI I++ +FT + P PTT++D + + ++ + V + T + L+NP
Sbjct: 64 LIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRI 123
Query: 211 GF 206
GF
Sbjct: 124 GF 125
>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1311
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 300 KTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAV 452
K + + S + +G L +VVD + + +SKL+VG +GI + A+
Sbjct: 1004 KLATLSSFAELSMNGIKLSSQVVDSLYALVKTPSLSKLLVGSSGIGTDGAI 1054
>At1g63270.1 68414.m07153 ABC transporter family protein
Length = 229
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 450 VSYIIRKYKTLGGIVLTASHNPGGVDE 530
+ YII +++ GGIV+ A+H P +++
Sbjct: 177 LEYIIAEHRKKGGIVIVATHLPIDIED 203
>At5g37630.1 68418.m04532 chromosome condensation family protein
contains pfam profile: PF04154 chromosome condensation
protein 3, C-terminal region
Length = 1051
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 225 LRKKVKVFVQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDKII-KISAANG 401
L K V FVQE F Q + + + +IG + +GGD + E V K+ K+ AA G
Sbjct: 456 LHKTVSSFVQELLRRPFEQELDEDGNSIVIGDGINLGGDKDW--AEAVSKLAKKVHAAPG 513
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,119
Number of Sequences: 28952
Number of extensions: 259347
Number of successful extensions: 687
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -