Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0754
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    29   0.63 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   4.5  

>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 426 FVIL*CLQFFRPFLFLVSNSNDFQRLFLN*HGCYCSATLI*QILMDAF 283
           F++  CL F R FL L+S        F++ H  YC+   +   L+DAF
Sbjct: 27  FILTLCLGFTRVFLVLIS------LYFMSWHPNYCTIVYLYSSLLDAF 68


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 349  FFKLTRLLL*RHPYLANFNGRFLHTDGS 266
            FF++T+++     YL + N ++L  DGS
Sbjct: 1209 FFQMTQIMTIMEDYLRSKNWKYLRLDGS 1236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,244
Number of Sequences: 5004
Number of extensions: 37197
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)