Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0754
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z34533-7|CAA84301.2|  369|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AY158691-1|AAN41643.1|  369|Caenorhabditis elegans choline kinas...    27   7.2  

>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 498 PKTIAVGKRGDIVCIFLSALNKIIFVIL*CLQFFRPFLFLVSNSNDFQR 352
           PK  +  KR  I C+  +     +F++   L FF    F VS+SN FQ+
Sbjct: 80  PKN-STSKRWKIACVSATVTLLAVFILATILSFF----FFVSSSNTFQK 123


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 498 PKTIAVGKRGDIVCIFLSALNKIIFVIL*CLQFFRPFLFLVSNSNDFQR 352
           PK  +  KR  I C+  +     +F++   L FF    F VS+SN FQ+
Sbjct: 80  PKN-STSKRWKIACVSATVTLLAVFILATILSFF----FFVSSSNTFQK 123


>Z34533-7|CAA84301.2|  369|Caenorhabditis elegans Hypothetical
           protein B0285.9 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 440 KADKKMQTMSPRFPTAIVLGYIDEISF 520
           +ADKK++  SP  PTA V   I E  F
Sbjct: 288 EADKKLKNRSPSDPTAEVKALIQECQF 314


>AY158691-1|AAN41643.1|  369|Caenorhabditis elegans choline kinase
           CKB-2 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 440 KADKKMQTMSPRFPTAIVLGYIDEISF 520
           +ADKK++  SP  PTA V   I E  F
Sbjct: 288 EADKKLKNRSPSDPTAEVKALIQECQF 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,302
Number of Sequences: 27780
Number of extensions: 204280
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)