Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0753
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   4.2  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   4.2  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   5.6  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 200 LNPTEYLHFFINYYNDF 150
           L+P E++H +I+ Y+DF
Sbjct: 371 LDPVEFIHKYIDIYDDF 387


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 281 KLYEFQISFLCVFFKNSYVIFVLGSRRLNPT 189
           KL+E  +S   +  K+S ++FV     LNPT
Sbjct: 192 KLFEVDLSESYIELKSSSILFVYDYSSLNPT 222


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 280 LFQI*NGNSTVWTYCFPIELHLEDL 354
           LF   +G S VW Y F  E H+E L
Sbjct: 318 LFNGISGTSLVWRYRFSFEPHVERL 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,976
Number of Sequences: 5004
Number of extensions: 42957
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)