Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0753
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_04_0014 + 7578921-7579649                                           29   2.4  
04_03_0735 + 19141038-19143227                                         28   4.3  
11_06_0284 + 21909758-21913645                                         27   7.5  
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624...    27   7.5  

>10_04_0014 + 7578921-7579649
          Length = 242

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 496 CKSTSHSHLYSHALTGIKNRMIIITQVQMTATLHMNKTRLNNTQ 365
           C+ ++ +H   H+L+G+ NR      V++   +H+N   L+  Q
Sbjct: 23  CRRSTATHGCCHSLSGVGNRQQFARSVEVIQKIHINVPLLDAMQ 66


>04_03_0735 + 19141038-19143227
          Length = 729

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 452 RHKKSYDYNYSSTNDRY 402
           +H++SY YNYS+T + Y
Sbjct: 303 KHEESYSYNYSATGNSY 319


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 147 KYHMKIQDIYNSLDSF*NTKFQFDNNKISFNYVSC 43
           K H  +Q  + SLD+   T F +  N +   Y SC
Sbjct: 792 KLHSTLQASHKSLDAIAKTMFMYSYNDLPKEYKSC 826


>01_01_0801 -
           6241710-6241869,6242522-6242689,6243202-6243269,
           6243372-6243593,6243676-6243774
          Length = 238

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 336 TPLGRLILFDCVLFNL 383
           TPLG  ILFDCVL  L
Sbjct: 192 TPLGNKILFDCVLETL 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,223,908
Number of Sequences: 37544
Number of extensions: 208863
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)