Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0753
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-2|AAB52965.2|  382|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL021483-1|CAA16348.1|  272|Caenorhabditis elegans Hypothetical ...    28   5.1  
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    28   5.1  
AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical ...    27   6.7  
AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical ...    27   6.7  
U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related...    27   8.9  
AL110477-1|CAB54325.1|  331|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U58748-2|AAB52965.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK180.1 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/90 (27%), Positives = 41/90 (45%)
 Frame = -3

Query: 517 LFPFLIHCKSTSHSHLYSHALTGIKNRMIIITQVQMTATLHMNKTRLNNTQSNKISLPSG 338
           + P +  C S SHS ++   L  +K  ++I+       T H+N   LN+  S  I   +G
Sbjct: 226 IIPEVEKCNS-SHSGVFQAVLYAVKGVLMILGCFLAWETRHVNVPALND--SKYIGTRTG 282

Query: 337 VLLGSSRSIR*NYRFKFGINYMNFRSRFCA 248
                 R ++  + F   ++  N  SRFCA
Sbjct: 283 -----QRDVQSRFVFCHFLDDTNVVSRFCA 307


>AL021483-1|CAA16348.1|  272|Caenorhabditis elegans Hypothetical
           protein Y38H8A.1 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 278 LYEFQISFLCVFFKNSYVIFVLGSRRLNPTE 186
           ++ F  S L V F NS+V+FV    +  PTE
Sbjct: 1   MHHFIHSVLVVMFLNSFVLFVAACMKTIPTE 31


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 517 LFPFLIHCKSTSHSHLYSHALTGIKNR-MIIITQVQMTATLHMNKTRLNNTQSNKISLP 344
           LFP +IH      +HL+   ++ +K+  +I++  + +  T+ M  T+  N  + +  +P
Sbjct: 31  LFPIIIHSNKKESAHLHPIKISYLKDTGIIVVIGIVVITTIFMVVTKCFNFCAQREYVP 89


>AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 245 FFKNSYVIFVLGSRRLNPTEYLHFFINYYNDFLN 144
           F+ +SY + +L  + + P  YL  FI  Y+D L+
Sbjct: 81  FYYDSYQLSILAEKCIPPRSYLLSFILLYSDALS 114


>AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 245 FFKNSYVIFVLGSRRLNPTEYLHFFINYYNDFLN 144
           F+ +SY + +L  + + P  YL  FI  Y+D L+
Sbjct: 81  FYYDSYQLSILAEKCIPPRSYLLSFILLYSDALS 114


>U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related
           family protein 1 protein.
          Length = 956

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 527 LLMTVSFSNSL*IHVAFSFIQSRINRHKKS 438
           ++M + FS  L  H+A++F QS  N H ++
Sbjct: 833 VIMCIGFSVDLSAHIAYAFSQSYGNSHARA 862


>AL110477-1|CAB54325.1|  331|Caenorhabditis elegans Hypothetical
           protein Y113G7B.2 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -2

Query: 269 FQISFLCVFFKNSYVIFVLGSRRLN----PTEYLHF 174
           F +  + +FF+N   IFVL +++L+    PT  LH+
Sbjct: 110 FMLVAISIFFENRLFIFVLTNKKLHRYAIPTYILHY 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,597,124
Number of Sequences: 27780
Number of extensions: 224039
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)