Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0753
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.67 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.67 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.67 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.67 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 449 HKKSYDYNYSSTN-DRYLTYE*N*IKQYTV 363
           H  +Y YNY++ N ++ L Y  N I+Q  +
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 449 HKKSYDYNYSSTN-DRYLTYE*N*IKQYTV 363
           H  +Y YNY++ N ++ L Y  N I+Q  +
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 449 HKKSYDYNYSSTN-DRYLTYE*N*IKQYTV 363
           H  +Y YNY++ N ++ L Y  N I+Q  +
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 449 HKKSYDYNYSSTN-DRYLTYE*N*IKQYTV 363
           H  +Y YNY++ N ++ L Y  N I+Q  +
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 449 HKKSYDYNYSSTN 411
           H  +Y YNY++ N
Sbjct: 90  HNNNYKYNYNNNN 102


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 449 HKKSYDYNYSSTN 411
           H  +Y YNY++ N
Sbjct: 90  HNNNYKYNYNNNN 102


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 476 SFIQSRINRHKKSYDYNYSSTNDR 405
           S + +  N +  +Y YNY++ N +
Sbjct: 316 SSLSNNYNYNNNNYKYNYNNYNKK 339


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 476 SFIQSRINRHKKSYDYNYSSTN 411
           S + +R   +  +Y YNY++ N
Sbjct: 83  SSLSNRTIHNNNNYKYNYNNNN 104


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 427 ITQVQMTATLHMNKTRLNNTQ 365
           I    +  TLHMN+T L  ++
Sbjct: 155 IENAHIRRTLHMNRTSLKTSK 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,149
Number of Sequences: 438
Number of extensions: 3177
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)