Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0752
         (308 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   1.0  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.0  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   1.8  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)               27   3.1  
SB_51461| Best HMM Match : DRMBL (HMM E-Value=2.6)                     27   4.1  
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               27   4.1  
SB_25369| Best HMM Match : HEAT (HMM E-Value=3.9e-05)                  27   4.1  
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)               26   5.4  
SB_28992| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      26   7.2  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               26   7.2  
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)           25   9.5  

>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +2

Query: 71  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 238
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 79  CHCRDGDSKQTNDCL 35
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 236 HQKLKLTEREEAAPKMPRGQRFSL 165
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 236 HQKLKLTEREEAAPKMPRGQRFSL 165
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 236 HQKLKLTEREEAAPKMPRGQRFSL 165
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 236 HQKLKLTEREEAAPKMPRGQRFSL 165
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 236 HQKLKLTEREEAAPKMPRGQRFSL 165
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 236 HQKLKLTEREEAAPKMPRGQRF 171
           H+ L + ER+ ++PK PR  +F
Sbjct: 21  HENLSINERDSSSPKRPRQHQF 42


>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 152 VKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAI 292
           ++  P  S VLS  S  PPL  +    +  T   + + I  PD++A+
Sbjct: 221 IELGPQSSGVLSLTSDPPPLEAMGKEGEAHTDSGVEEEIDIPDEEAV 267


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +2

Query: 8   IRETQATNMKTI-ICLFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVL 184
           IR  Q TN   + + +  +A   M   +   N+      N TAR    + ++    ++V+
Sbjct: 53  IRFLQTTNSTIVDMSMSAVANCCMFDESRKENLTSTSILNRTARALANLAEDEKN-AIVI 111

Query: 185 SAFSVLPPLAQLAL-ASDGETHEELLKAI 268
                +  L +L   ASD E  E +L+A+
Sbjct: 112 EELGAIEELTKLLTDASDTECQESVLRAL 140


>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
          Length = 501

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 127 EVIVSIFEHIREICDGCH 74
           +VI++ +EH +  CDGCH
Sbjct: 356 DVIIARYEHNKCRCDGCH 373


>SB_51461| Best HMM Match : DRMBL (HMM E-Value=2.6)
          Length = 455

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 157 FHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSKQTNDCLHVCG 23
           FH  G +   E+  S F  + E+ D C    GD  + + C H  G
Sbjct: 294 FHAIGDY---EMFDSCFHMLYEMFDSCFHTIGDYVRIDSCFHTIG 335


>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 1131

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 236 HQKLKLTEREEAAPKMPRGQRFSL 165
           HQ L + E + ++PK PR  +F +
Sbjct: 550 HQNLSINEMDSSSPKRPRQHQFGV 573


>SB_25369| Best HMM Match : HEAT (HMM E-Value=3.9e-05)
          Length = 415

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 3   RGFERRRPQT*RQSFVCLLSPSRQWQPSQISL 98
           +GF   RP+  +  ++C LS   QW P Q+ L
Sbjct: 270 KGFHDTRPEC-KYLYLCALSHLLQWIPKQVLL 300


>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 205 RQHRKCREDNAFPWIIFHYFGKHS 134
           R HR+CR  N   W   H FG H+
Sbjct: 291 RAHRRCRRQNGKRW---HAFGTHT 311


>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
          Length = 144

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 166 WIIFHYFGKHSGCEVIVSIFEHIREICDGCHCRDG 62
           W   HY     G E+I +IF+ +R+  + C C  G
Sbjct: 57  WAKGHY---SEGAELIDNIFDVLRKEAENCDCMQG 88


>SB_28992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/48 (20%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -2

Query: 217 LSERRQHRKCREDNAFPWIIFHYFGKHSGC----EVIVSIFEHIREIC 86
           ++  RQ + CR+ +  PW   H+  + +      +++V++ + I+++C
Sbjct: 367 IARERQAKLCRQRSWMPWKNGHWISRTAYSPKRHDLLVNVIKDIKDVC 414


>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 48   VCLLSPSRQWQPSQISLMCSKMETITS 128
            +CLLS  ++ QP  I   CS++ T +S
Sbjct: 1383 ICLLSLQQEQQPLNIRSWCSQIPTSSS 1409


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 133  QNVYRSSEK*SREKRCPL 186
            Q VYRS+EK  REK  PL
Sbjct: 1093 QKVYRSAEKLEREKTHPL 1110


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 131 ARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKA 265
           +R   +   +N GK+V L      PP+AQ  + S   T +++LKA
Sbjct: 481 SRFGVQYYNSNNGKNVALVK---QPPVAQTTVPSQETTAQQMLKA 522


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 1   HEDSR-DAGHKHEDNHLFVYYRHRGNGS 81
           H D+  +AG+KH+D      Y+H   GS
Sbjct: 530 HNDTASEAGYKHDDTASEAGYKHNDTGS 557


>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
          Length = 975

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 127 EVIVSIFEHIREICDGCH-CRDGDS 56
           + +++    +R +CD CH CR G S
Sbjct: 247 QTVINAHHTVRNVCDICHRCRKGCS 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,284,409
Number of Sequences: 59808
Number of extensions: 179377
Number of successful extensions: 692
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)