Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0752
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72410.1 68414.m08374 COP1-interacting protein-related simila...    30   0.28 
At5g37490.1 68418.m04515 U-box domain-containing protein similar...    29   0.48 
At1g33390.1 68414.m04133 helicase domain-containing protein simi...    29   0.48 
At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containi...    29   0.84 
At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containi...    29   0.84 
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi...    27   2.6  
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi...    27   3.4  
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont...    27   3.4  
At2g25800.1 68415.m03096 expressed protein                             26   5.9  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    26   5.9  
At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorgani...    26   5.9  
At1g62700.1 68414.m07077 no apical meristem (NAM) family protein...    26   5.9  
At3g46200.1 68416.m05001 MutT/nudix family protein similar to he...    25   7.8  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    25   7.8  

>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
           to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
           thaliana] GI:3327870
          Length = 1163

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 187 REDNAFPWIIFHYFGKHSGCEVIVSIFEHIREICDG 80
           R D    +++F    KHS CE+ VS  E   ++  G
Sbjct: 2   RSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASG 37


>At5g37490.1 68418.m04515 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 435

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 211 ERRQHRKCREDNAFPWIIFHYFGKHSGCEVIVSIFEHI 98
           E  ++RKC  +N+  W++   F K SG E +  +   I
Sbjct: 153 ESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTFMLNEI 190


>At1g33390.1 68414.m04133 helicase domain-containing protein similar
           to kurz protein [Drosophila melanogaster] GI:5869803;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1237

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 146 EVVKN--NPGKSVVLSAFSVLPPLAQLALASDGETHEELL 259
           E VKN  +PGK  VL  +++L P AQL +  + E  E L+
Sbjct: 636 EQVKNKFSPGKLRVLPLYAMLSPAAQLRVFEEVEKEERLV 675


>At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 511

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 86  TNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKA 265
           T +S   +NGN +   +MF  + K+   K   ++  SVLP  A L     G   E   + 
Sbjct: 184 TVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARE 243

Query: 266 IGFPDD 283
            GF D+
Sbjct: 244 NGFFDN 249


>At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 613

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 184 EDNAFPWIIFHYFGKHSGCEVIVSIFEHIRE 92
           +D  F  ++   +GKH  CE  + IFE +RE
Sbjct: 434 KDPVFWNVMISGYGKHGECESAIEIFELLRE 464


>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 89  NLSNVLKNGNDNFTARMFTEVVK 157
           NL  +LKNG DN  A +F  +++
Sbjct: 431 NLLEILKNGTDNIGAEIFEPLIR 453


>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 687

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 208 RRQHRKCREDNAFPWIIFHYFGKHSGCEVIVSIFEHIREICDGC 77
           R Q  KC ED A    +   +GK+S  +  + +F+ +REI  GC
Sbjct: 70  RSQECKCDEDVALS--VIKTYGKNSMPDQALDVFKRMREIF-GC 110


>At2g20210.1 68415.m02363 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 604

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 98  NVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP 277
           N+ KN     TAR  ++++   P    + ++++++PP A L L     T +  LK +   
Sbjct: 503 NISKNRGGLETARFLSKLIPLAPKLISIDASYNLMPPEALLMLCDSLRTAKGDLKRLDMT 562

Query: 278 DDDAI 292
            +  I
Sbjct: 563 GNSCI 567


>At2g25800.1 68415.m03096 expressed protein
          Length = 996

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 288 ASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAERTT 175
           AS   K +  +SSS +SP   K++ +  GS   ++R T
Sbjct: 106 ASKMKKALGLRSSSSLSPGSNKSSGSASGSNGKSKRPT 143


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 1   HEDSRDAGHKHEDNHLFVYYRHRGNGSRHKS 93
           H D  D  H H+ NH   ++ H G+   H S
Sbjct: 311 HHD-HDHDHHHDHNHDHDHHHHDGHDHHHHS 340


>At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorganic
           pyrophosphatase (AVPL1) identical to vacuolar-type
           H+-translocating inorganic pyrophosphatase GI:6901676
           from [Arabidopsis thaliana]
          Length = 802

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 126 KLSFPFLSTLERFVTAAIAAMAIVNKQMIVFMFVACVSRILV 1
           KL+   LS +  F   AI  M      +IVF+F  C+   L+
Sbjct: 40  KLNVRVLSIILLFCFGAIFYMGASTSPIIVFVFTVCIISFLL 81


>At1g62700.1 68414.m07077 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 394

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 3   RGFERRRPQT*RQSFVCLLSPSRQWQPSQISLMCSKMETITSQP 134
           R F+++   T R+      SPS+ W   Q+S M S  E I+S P
Sbjct: 152 RVFKKKLAATVRKMGDYHSSPSQHWYDDQLSFMAS--EIISSSP 193


>At3g46200.1 68416.m05001 MutT/nudix family protein similar to head
           organizer protein P17F11 GI:17976973 from [Xenopus
           laevis]; contains a NUDIX hydrolase domain IPR000086
          Length = 311

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 82  GCHCRDGDSKQTNDCLHVCGLRL 14
           G +C D D   TN+  HVC LRL
Sbjct: 75  GGYCLDDDDGSTNEVPHVC-LRL 96


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 246 WVSPSEAKAN*ARGGSTENAERTTLFPGLFF 154
           WVS S+A+    R G T + E   L P  FF
Sbjct: 367 WVSRSQAEQRRGRTGRTCDGEVYRLVPSAFF 397


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,470,208
Number of Sequences: 28952
Number of extensions: 122062
Number of successful extensions: 448
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)