Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0751
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    87   2e-18
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   5.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.7  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 43/74 (58%), Positives = 52/74 (70%)
 Frame = +1

Query: 70  LQEEFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 249
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKGKFKWNAWE 59

Query: 250 KLAGTSKEDAQKAY 291
           +L G SKEDA   Y
Sbjct: 60  ELKGKSKEDAASEY 73


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +1

Query: 40  TSYPHLINMSLQEEFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDL 219
           T+ P+  N S  EE +      KN+   P+      L    KQ ++    P N  G+ D+
Sbjct: 389 TNIPYSPN-SNHEEINSIPLRNKNIFVPPSQGHSPLLEKIKKQGSLPSTTPVNEGGISDI 447

Query: 220 KGKAKFD 240
             K+ +D
Sbjct: 448 IPKSLYD 454


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 464 HFCLKCFFFKNTNSY 508
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +1

Query: 82   FDQAAANVKNLKALPTDAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHK 252
            F Q AA+++    +  DA LLN+Y +F+Q  + V +A    +  L + +K +    +W  
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359

Query: 253  L-AGTSKEDAQKAYTRDRRRSHSFHRPQR 336
                  KE A+K++    +  H +    R
Sbjct: 3360 TNVYALKESAKKSHAELFKVLHRYREVLR 3388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,735
Number of Sequences: 5004
Number of extensions: 51014
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)