Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0751
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   1e-08
SB_54728| Best HMM Match : Collagen (HMM E-Value=6.1)                  29   2.3  
SB_36238| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_14528| Best HMM Match : CXCXC (HMM E-Value=8.1)                     28   5.2  
SB_29230| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)              27   9.1  
SB_28191| Best HMM Match : Insulin (HMM E-Value=8.1)                   27   9.1  
SB_12600| Best HMM Match : Insulin (HMM E-Value=8.1)                   27   9.1  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 32/77 (41%), Positives = 45/77 (58%)
 Frame = +1

Query: 70  LQEEFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 249
           +Q+ F QA   V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 250 KLAGTSKEDAQKAYTRD 300
           +     +E A K Y ++
Sbjct: 71  QHGKMPQEKAMKIYVQE 87


>SB_54728| Best HMM Match : Collagen (HMM E-Value=6.1)
          Length = 161

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
 Frame = +1

Query: 94  AANVKNLKALPTDAQLLNLYAHFKQATV-GDADPANRPGLLD---LKGKAKFDAWHKLAG 261
           A+ +     L  D++L   +A    +T+ G + PA    L D   L G +      KLAG
Sbjct: 14  ASTLAGTSKLMGDSKLAGAFAPVGTSTLAGSSKPAKASILADASTLAGASILAGPSKLAG 73

Query: 262 TSKEDAQKAYTRDRRRSHSFHRPQRIKDLIFNDART**FSLSSVLYKYARFFASSS 429
            SK + +  YT  + RS      +  + L      T  + +S  L+K   F+A +S
Sbjct: 74  ASKLECECGYTSGKNRSLRLRSVRDQRALPNLTVWTCQYFVSHSLHKRYVFYAGNS 129


>SB_36238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 26/99 (26%), Positives = 41/99 (41%)
 Frame = -3

Query: 310 TFDDLECRLSGHPPSKCRPVCAKRQI*LYPSSLEDQVYWLDRHLQLWPV*NGHTS*GVGH 131
           T DD    L G   + CR VC           + D    L    +   V +GHT  G+ H
Sbjct: 169 TLDDAGKTLVGESAADCRAVCEIHPSAPLLEGVSDTTEALHSEYEAIRVEDGHTVTGIVH 228

Query: 130 QLEELSGSSRWLRLGQILLGETY*SNVGNLLNDDTPVPS 14
           + E++     + +L  ++  E     + NL+N  TP P+
Sbjct: 229 EQEKM-----YPKLDSLITTENG-KKMKNLINLLTPQPA 261


>SB_14528| Best HMM Match : CXCXC (HMM E-Value=8.1)
          Length = 310

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = -2

Query: 227 LPFK----SRRPGLLAGSASPT-VACLKWA-------YKLRSWASVGRAFRFFTLAAAWS 84
           LP+K     RR  LL     P  + C++W        Y L SW +   A RF+ ++   +
Sbjct: 69  LPYKLGSHERRQSLLPPRTPPVAITCMRWVATNAASRYYLMSWVATNAASRFYLISWVAT 128

Query: 83  NSSWR 69
           N++ R
Sbjct: 129 NAASR 133


>SB_29230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 224 VKLNLTLGTNWPALRRRMPRKPTLEIVEGL 313
           ++  + LGTN P LR R+ R+P L +   +
Sbjct: 134 IRDQIVLGTNSPTLRERLLREPDLTLTTAI 163


>SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)
          Length = 457

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 27/109 (24%), Positives = 38/109 (34%)
 Frame = +1

Query: 133 AQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYTRDRRRS 312
           A L+ L    ++  + D   A R   LDL    K   W  +     E       R  RRS
Sbjct: 245 AALMGLVTSIRRDQLKDEKAAKRHAPLDLLSGWKLRKWSFILAYQWEAFDAWSMRSNRRS 304

Query: 313 HSFHRPQRIKDLIFNDART**FSLSSVLYKYARFFASSSRIRLF*RHLY 459
           H  H    ++  I   A +    + ++L  Y     S SR     R  Y
Sbjct: 305 HVTHDVGDLQRNIALGAGSTSARIGAILAPYVAMTVSISRSLFCQRRFY 353


>SB_28191| Best HMM Match : Insulin (HMM E-Value=8.1)
          Length = 175

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 224 VKLNLTLGTNWPALRRRMPRKPTLEIVE 307
           ++  + +GTN P LR R+ R+P L++ +
Sbjct: 134 IRDQIVVGTNSPVLRERLLREPELKLTK 161


>SB_12600| Best HMM Match : Insulin (HMM E-Value=8.1)
          Length = 175

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 224 VKLNLTLGTNWPALRRRMPRKPTLEIVE 307
           ++  + +GTN P LR R+ R+P L++ +
Sbjct: 134 IRDQIVVGTNSPVLRERLLREPELKLTK 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,509,329
Number of Sequences: 59808
Number of extensions: 365516
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)