Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0750
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    29   1.6  
At3g24260.1 68416.m03047 hypothetical protein                          29   1.6  
At2g28550.2 68415.m03469 AP2 domain-containing transcription fac...    29   2.9  
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac...    29   2.9  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    28   5.0  
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    27   6.6  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    27   6.6  
At5g67180.1 68418.m08469 AP2 domain-containing transcription fac...    27   8.7  
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    27   8.7  

>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 272 KDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGF 433
           +  M TACA+C D   V ARK+ + + + +   W  M + Y    E +E    F
Sbjct: 177 RTAMVTACARCGD--VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +2

Query: 146 DKYDNIDVDEILENRKLLVPYIKCVL----DEGRCTPDGKELKAHIKDGMQTACAKCTDK 313
           D  +  + + IL N   ++P I+ V     D  R   D  E K  + + ++    + T  
Sbjct: 53  DHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRS 112

Query: 314 QKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFL 436
           +      + K  K H  DY + +K+     D++K +Y+ F+
Sbjct: 113 ELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFV 153


>At2g28550.2 68415.m03469 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 381

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = +2

Query: 290 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYE----GFLAGQN*- 451
           A A+  D+  +  R +   I     DY E MK   +  K+EF  I      GF  G +  
Sbjct: 187 AAARAYDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKY 246

Query: 452 ---TCYKCLRWYNRIIVFFCKKS 511
              T +KC RW  R+  F  KK+
Sbjct: 247 RGVTLHKCGRWEARMGQFLGKKA 269


>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 449

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = +2

Query: 290 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYE----GFLAGQN*- 451
           A A+  D+  +  R +   I     DY E MK   +  K+EF  I      GF  G +  
Sbjct: 187 AAARAYDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKY 246

Query: 452 ---TCYKCLRWYNRIIVFFCKKS 511
              T +KC RW  R+  F  KK+
Sbjct: 247 RGVTLHKCGRWEARMGQFLGKKA 269


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 182 ENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 301
           +N++ +VP    ++ +  C  +GK  K  +++G+  AC +
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGE 394


>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 251 KELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEA 364
           K  + H+K    + C KC  K K   R IV++I +  A
Sbjct: 12  KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAA 49


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 46  HRFCVD*NHCGHEVSNNCCTFIRGGLIDCR 135
           HR C     C +E+  NCC  IRGG +  R
Sbjct: 333 HRSCPK---CSYELCLNCCQEIRGGWLSDR 359


>At5g67180.1 68418.m08469 AP2 domain-containing transcription
           factor, putative similar to (SP:P47927) Floral homeotic
           protein APETALA2. [Mouse-ear cress] {Arabidopsis
           thaliana}
          Length = 352

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
 Frame = +2

Query: 290 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYE----GFLAGQN*- 451
           A A+  D+  +  R +   I     DY + +K   +  K+EF  +      GF  G +  
Sbjct: 130 AAARAYDRAAIKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKY 189

Query: 452 ---TCYKCLRWYNRIIVFFCKK 508
              T +KC RW +R+  F  KK
Sbjct: 190 RGVTLHKCGRWESRLGQFLNKK 211


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +2

Query: 122 LSIAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 301
           L+ + +   K   +D D    N K+   Y++ V +EG C    +E     K+ +Q    +
Sbjct: 66  LATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREALRRAKE-LQCDLVE 124

Query: 302 CTDKQKVSARKIVKH 346
                K    KIVK+
Sbjct: 125 VQRDAKPPVCKIVKY 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,228,351
Number of Sequences: 28952
Number of extensions: 242674
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)